Cancer Team Data Access Committee

charles.mullighan@stjude.org

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Dataset ID	Description	Technology	Samples
EGAD00001008416	WGS (tumor and germline samples) was performed to identify structural variants in the UBTF/CDX2 subgroup. RNA-seq was performed to detect gene fusion in the UBTF/CDX2 subgroup. HiChIP was performed to investigate 3D chromatin architecture and enhancer landscapes of representative patient samples and cell lines harboring Type I and II FLT3-PAN3 deletions and amplifications.	Illumina HiSeq 3000 Illumina NovaSeq 6000	15
EGAD50000000022	7 Isoform sequencing or Long-read RNAseq mapped bam files. Reads were aligned to HG38 reference using Minimap2.	PacBio RS II	7
EGAD50000000023	19 H3K27ac HICHIP from T-ALL patient samples and one healthy normal control sample. Reads were aligned to HG38 reference.	Illumina NovaSeq 6000	20
EGAD50000000024	19 ATAC-seq from T-ALL patient samples and one healthy normal control sample. Reads were aligned to HG38 reference	Illumina NovaSeq 6000	20
EGAD50000000150	Whole exome sequencing data for 425 samples with B-cell acute lymphoblastic leukemia	Illumina HiSeq 2500	425
EGAD50000000151	RNA-seq data for 14 samples with B-cell acute lymphoblastic leukemia	Illumina HiSeq 2500	14