Amplicon based re-sequencing of multi-region PDAC samples
Multi-region tumor samples were cut from frozen sections or FFPEs and reviewed from microdissection and H&E staining in order to select ones with high cellularity. DNA extraction was done using DNeasy Blood & Tissue Kits for frozen samples following the manufacturer’s guideline. Extracted DNAs were processed on an Illumina HiSeq 2500 in a paired end mode (100x100) using a custom targeted panel based on the list of all unique somatic mutations from the original WES data by the Integrated Genomics Operation (IGO) at Memorial Sloan Kettering Cancer Center (New York, NY).
- 07/05/2024
- 244 samples
- DAC: EGAC00000000011
- Technology: Illumina HiSeq 2500
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000239 | Resequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000091165 | bam | 4.4 GB | ||
| EGAF50000091166 | bam | 3.4 GB | ||
| EGAF50000091167 | bam | 4.6 GB | ||
| EGAF50000091168 | bam | 4.1 GB | ||
| EGAF50000091169 | bam | 5.1 GB | ||
| EGAF50000091170 | bam | 4.6 GB | ||
| EGAF50000091171 | bam | 4.3 GB | ||
| EGAF50000091172 | bam | 4.4 GB | ||
| EGAF50000091173 | bam | 5.3 GB | ||
| EGAF50000091174 | bam | 3.3 GB | ||
| EGAF50000091175 | bam | 4.6 GB | ||
| EGAF50000091176 | bam | 1.4 GB | ||
| EGAF50000091177 | bam | 3.5 GB | ||
| EGAF50000091178 | bam | 5.3 GB | ||
| EGAF50000091179 | bam | 3.6 GB | ||
| EGAF50000091180 | bam | 3.9 GB | ||
| EGAF50000091181 | bam | 2.7 GB | ||
| EGAF50000091182 | bam | 753.4 MB | ||
| EGAF50000091183 | bam | 4.4 GB | ||
| EGAF50000091184 | bam | 4.3 GB | ||
| EGAF50000091185 | bam | 6.2 GB | ||
| EGAF50000091186 | bam | 3.1 GB | ||
| EGAF50000091187 | bam | 6.2 GB | ||
| EGAF50000091188 | bam | 3.6 GB | ||
| EGAF50000091189 | bam | 5.3 GB | ||
| EGAF50000091190 | bam | 11.7 GB | ||
| EGAF50000091191 | bam | 15.5 GB | ||
| EGAF50000091192 | bam | 11.7 GB | ||
| EGAF50000091193 | bam | 2.8 GB | ||
| EGAF50000091194 | bam | 3.4 GB | ||
| EGAF50000091195 | bam | 1.1 GB | ||
| EGAF50000091196 | bam | 16.7 GB | ||
| EGAF50000091197 | bam | 1.7 GB | ||
| EGAF50000091198 | bam | 11.2 GB | ||
| EGAF50000091199 | bam | 12.7 GB | ||
| EGAF50000091200 | bam | 12.7 GB | ||
| EGAF50000091201 | bam | 7.7 GB | ||
| EGAF50000091202 | bam | 13.3 GB | ||
| EGAF50000091203 | bam | 930.1 MB | ||
| EGAF50000091204 | bam | 7.4 GB | ||
| EGAF50000091205 | bam | 7.3 GB | ||
| EGAF50000091206 | bam | 9.4 GB | ||
| EGAF50000091207 | bam | 10.0 GB | ||
| EGAF50000091208 | bam | 14.0 GB | ||
| EGAF50000091209 | bam | 18.0 GB | ||
| EGAF50000091210 | bam | 15.2 GB | ||
| EGAF50000091211 | bam | 16.3 GB | ||
| EGAF50000091212 | bam | 9.3 GB | ||
| EGAF50000091213 | bam | 18.9 GB | ||
| EGAF50000091214 | bam | 17.8 GB | ||
| EGAF50000091215 | bam | 39.5 GB | ||
| EGAF50000091216 | bam | 16.2 GB | ||
| EGAF50000091217 | bam | 11.5 GB | ||
| EGAF50000091218 | bam | 2.4 GB | ||
| EGAF50000091219 | bam | 9.3 GB | ||
| EGAF50000091220 | bam | 5.4 GB | ||
| EGAF50000091221 | bam | 9.1 GB | ||
| EGAF50000091222 | bam | 8.1 GB | ||
| EGAF50000091223 | bam | 5.8 GB | ||
| EGAF50000091224 | bam | 19.4 GB | ||
| EGAF50000091225 | bam | 6.5 GB | ||
| EGAF50000091226 | bam | 3.6 GB | ||
| EGAF50000091227 | bam | 11.2 GB | ||
| EGAF50000091228 | bam | 20.0 GB | ||
| EGAF50000091229 | bam | 5.7 GB | ||
| EGAF50000091230 | bam | 20.7 GB | ||
| EGAF50000091231 | bam | 2.2 GB | ||
| EGAF50000091232 | bam | 6.5 GB | ||
| EGAF50000091233 | bam | 1.4 GB | ||
| EGAF50000091234 | bam | 6.3 GB | ||
| EGAF50000091235 | bam | 4.1 GB | ||
| EGAF50000091236 | bam | 7.9 GB | ||
| EGAF50000091237 | bam | 1.9 GB | ||
| EGAF50000091238 | bam | 16.8 GB | ||
| EGAF50000091239 | bam | 5.3 GB | ||
| EGAF50000091240 | bam | 6.0 GB | ||
| EGAF50000091241 | bam | 16.0 GB | ||
| EGAF50000091242 | bam | 13.7 GB | ||
| EGAF50000091243 | bam | 3.9 GB | ||
| EGAF50000091244 | bam | 16.9 GB | ||
| EGAF50000091245 | bam | 1.4 GB | ||
| EGAF50000091246 | bam | 8.4 GB | ||
| EGAF50000091247 | bam | 6.0 GB | ||
| EGAF50000091248 | bam | 7.6 GB | ||
| EGAF50000091249 | bam | 6.7 GB | ||
| EGAF50000091250 | bam | 10.6 GB | ||
| EGAF50000091251 | bam | 18.8 GB | ||
| EGAF50000091252 | bam | 2.0 GB | ||
| EGAF50000091253 | bam | 17.9 GB | ||
| EGAF50000091254 | bam | 8.8 GB | ||
| EGAF50000091255 | bam | 14.4 GB | ||
| EGAF50000091256 | bam | 10.4 GB | ||
| EGAF50000091257 | bam | 4.8 GB | ||
| EGAF50000091258 | bam | 1.6 GB | ||
| EGAF50000091259 | bam | 1.6 GB | ||
| EGAF50000091260 | bam | 7.8 GB | ||
| EGAF50000091261 | bam | 4.3 GB | ||
| EGAF50000091262 | bam | 11.0 GB | ||
| EGAF50000091263 | bam | 13.6 GB | ||
| EGAF50000091264 | bam | 4.6 GB | ||
| EGAF50000091265 | bam | 5.9 GB | ||
| EGAF50000091266 | bam | 6.3 GB | ||
| EGAF50000091267 | bam | 1.7 GB | ||
| EGAF50000091268 | bam | 8.6 GB | ||
| EGAF50000091269 | bam | 13.4 GB | ||
| EGAF50000091270 | bam | 8.7 GB | ||
| EGAF50000091271 | bam | 11.4 GB | ||
| EGAF50000091272 | bam | 1.8 GB | ||
| EGAF50000091273 | bam | 11.9 GB | ||
| EGAF50000091274 | bam | 6.0 GB | ||
| EGAF50000091275 | bam | 9.8 GB | ||
| EGAF50000091276 | bam | 3.2 GB | ||
| EGAF50000091277 | bam | 2.9 GB | ||
| EGAF50000091278 | bam | 3.5 GB | ||
| EGAF50000091279 | bam | 3.4 GB | ||
| EGAF50000091280 | bam | 4.0 GB | ||
| EGAF50000091281 | bam | 3.3 GB | ||
| EGAF50000091282 | bam | 3.7 GB | ||
| EGAF50000091283 | bam | 3.6 GB | ||
| EGAF50000091284 | bam | 1.4 GB | ||
| EGAF50000091285 | bam | 4.3 GB | ||
| EGAF50000091286 | bam | 4.2 GB | ||
| EGAF50000091287 | bam | 3.9 GB | ||
| EGAF50000091288 | bam | 4.0 GB | ||
| EGAF50000091289 | bam | 3.4 GB | ||
| EGAF50000091290 | bam | 2.3 GB | ||
| EGAF50000091291 | bam | 4.0 GB | ||
| EGAF50000091292 | bam | 3.1 GB | ||
| EGAF50000091293 | bam | 1.5 GB | ||
| EGAF50000091294 | bam | 3.4 GB | ||
| EGAF50000091295 | bam | 3.7 GB | ||
| EGAF50000091296 | bam | 4.2 GB | ||
| EGAF50000091297 | bam | 3.2 GB | ||
| EGAF50000091298 | bam | 2.4 GB | ||
| EGAF50000091299 | bam | 3.6 GB | ||
| EGAF50000091300 | bam | 4.4 GB | ||
| EGAF50000091301 | bam | 1.3 GB | ||
| EGAF50000091302 | bam | 4.6 GB | ||
| EGAF50000091303 | bam | 4.7 GB | ||
| EGAF50000091304 | bam | 3.8 GB | ||
| EGAF50000091305 | bam | 3.7 GB | ||
| EGAF50000091306 | bam | 3.9 GB | ||
| EGAF50000091307 | bam | 3.7 GB | ||
| EGAF50000091308 | bam | 5.0 GB | ||
| EGAF50000091309 | bam | 11.8 GB | ||
| EGAF50000091310 | bam | 6.8 GB | ||
| EGAF50000091311 | bam | 1.4 GB | ||
| EGAF50000091312 | bam | 7.2 GB | ||
| EGAF50000091313 | bam | 3.3 GB | ||
| EGAF50000091314 | bam | 3.1 GB | ||
| EGAF50000091315 | bam | 4.0 GB | ||
| EGAF50000091316 | bam | 2.5 GB | ||
| EGAF50000091317 | bam | 5.2 GB | ||
| EGAF50000091318 | bam | 4.5 GB | ||
| EGAF50000091319 | bam | 3.4 GB | ||
| EGAF50000091320 | bam | 3.1 GB | ||
| EGAF50000091321 | bam | 3.3 GB | ||
| EGAF50000091322 | bam | 4.4 GB | ||
| EGAF50000091323 | bam | 4.6 GB | ||
| EGAF50000091324 | bam | 4.3 GB | ||
| EGAF50000091325 | bam | 1.7 GB | ||
| EGAF50000091326 | bam | 5.9 GB | ||
| EGAF50000091327 | bam | 4.0 GB | ||
| EGAF50000091328 | bam | 3.6 GB | ||
| EGAF50000091329 | bam | 6.2 GB | ||
| EGAF50000091330 | bam | 3.6 GB | ||
| EGAF50000091331 | bam | 3.9 GB | ||
| EGAF50000091332 | bam | 3.5 GB | ||
| EGAF50000091333 | bam | 3.6 GB | ||
| EGAF50000091334 | bam | 3.7 GB | ||
| EGAF50000091335 | bam | 5.3 GB | ||
| EGAF50000091336 | bam | 3.6 GB | ||
| EGAF50000091337 | bam | 7.0 GB | ||
| EGAF50000091338 | bam | 4.8 GB | ||
| EGAF50000091339 | bam | 4.4 GB | ||
| EGAF50000091340 | bam | 3.2 GB | ||
| EGAF50000091341 | bam | 5.0 GB | ||
| EGAF50000091342 | bam | 3.5 GB | ||
| EGAF50000091343 | bam | 3.7 GB | ||
| EGAF50000091344 | bam | 4.8 GB | ||
| EGAF50000091345 | bam | 3.0 GB | ||
| EGAF50000091346 | bam | 4.2 GB | ||
| EGAF50000091347 | bam | 1.2 GB | ||
| EGAF50000091348 | bam | 3.2 GB | ||
| EGAF50000091349 | bam | 3.3 GB | ||
| EGAF50000091350 | bam | 8.7 GB | ||
| EGAF50000091351 | bam | 3.2 GB | ||
| EGAF50000091352 | bam | 3.0 GB | ||
| EGAF50000091353 | bam | 1.1 GB | ||
| EGAF50000091354 | bam | 4.3 GB | ||
| EGAF50000091355 | bam | 4.3 GB | ||
| EGAF50000091356 | bam | 4.8 GB | ||
| EGAF50000091357 | bam | 4.9 GB | ||
| EGAF50000091358 | bam | 4.3 GB | ||
| EGAF50000091359 | bam | 3.9 GB | ||
| EGAF50000091360 | bam | 4.0 GB | ||
| EGAF50000091361 | bam | 3.2 GB | ||
| EGAF50000091362 | bam | 5.0 GB | ||
| EGAF50000091363 | bam | 5.6 GB | ||
| EGAF50000091364 | bam | 3.3 GB | ||
| EGAF50000091365 | bam | 3.1 GB | ||
| EGAF50000091366 | bam | 1.4 GB | ||
| EGAF50000091367 | bam | 4.4 GB | ||
| EGAF50000091368 | bam | 3.0 GB | ||
| EGAF50000091369 | bam | 3.4 GB | ||
| EGAF50000091370 | bam | 4.1 GB | ||
| EGAF50000091371 | bam | 3.5 GB | ||
| EGAF50000091372 | bam | 5.0 GB | ||
| EGAF50000091373 | bam | 8.1 GB | ||
| EGAF50000091374 | bam | 4.9 GB | ||
| EGAF50000091375 | bam | 3.3 GB | ||
| EGAF50000091376 | bam | 2.9 GB | ||
| EGAF50000091377 | bam | 2.6 GB | ||
| EGAF50000091378 | bam | 2.5 GB | ||
| EGAF50000091379 | bam | 2.3 GB | ||
| EGAF50000091380 | bam | 3.6 GB | ||
| EGAF50000091381 | bam | 2.6 GB | ||
| EGAF50000091382 | bam | 1.7 GB | ||
| EGAF50000091383 | bam | 2.5 GB | ||
| EGAF50000091384 | bam | 2.3 GB | ||
| EGAF50000091385 | bam | 2.0 GB | ||
| EGAF50000091386 | bam | 4.3 GB | ||
| EGAF50000091387 | bam | 2.5 GB | ||
| EGAF50000091388 | bam | 3.1 GB | ||
| EGAF50000091389 | bam | 2.3 GB | ||
| EGAF50000091390 | bam | 2.3 GB | ||
| EGAF50000091391 | bam | 2.4 GB | ||
| EGAF50000091392 | bam | 2.0 GB | ||
| EGAF50000091393 | bam | 1.6 GB | ||
| EGAF50000091394 | bam | 1.7 GB | ||
| EGAF50000091395 | bam | 478.5 MB | ||
| EGAF50000091396 | bam | 2.6 GB | ||
| EGAF50000091397 | bam | 457.2 MB | ||
| EGAF50000091398 | bam | 569.9 MB | ||
| EGAF50000091399 | bam | 465.3 MB | ||
| EGAF50000091400 | bam | 915.7 MB | ||
| EGAF50000091401 | bam | 1.0 GB | ||
| EGAF50000091402 | bam | 652.8 MB | ||
| EGAF50000091403 | bam | 2.2 GB | ||
| EGAF50000091404 | bam | 2.0 GB | ||
| EGAF50000091405 | bam | 2.7 GB | ||
| EGAF50000091406 | bam | 2.1 GB | ||
| EGAF50000091407 | bam | 3.0 GB | ||
| EGAF50000091408 | bam | 2.5 GB | ||
| 244 Files (1.4 TB) | ||||