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Datasets of bulk beta-chain TCRseq anaysis from: "T cell repertorie analysis fom a Spanish cohort of mild and severe cases of COVID-19 recovered patients"

The cohort included 98 mild and 75 severe cases with a median age of 53 years. We amplified and sequenced the T Cell Receptor (TCR β) chain complementary determining region 3 (CDR3b) and performed bioinformatic analyses to assess repertoire diversity, clonality, allelic usage, and epitope affinity CDR3b clustering. CDR3b sequences were amplified by multiplex PCR and sequenced by Illumina. The resulting raw files were processed for clonotype assembly, filtering for coding clonotypes, removal of non-TRB alleles, and downsampling.

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DAA for the group formed in 'DAC for the study molecular biomarkers associated with the diagnosis and severity of genetic diseases

At the time of requesting access to the data deposited by this DAC, the project in which the researcher will use these data must, without exception, be funded and therefore must be approved by the corresponding Ethics Committee (CE), for studies involving human participants.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000331 Transcriptome Sequencing
  • A second revision of this submission has been carried out with the detection of 8 samples that had not been included in the analysis section previously. In this new update, these 8 remaining samples have been included in a new analysis, and this has been added to the existing one in the existing dataset.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000107292 tsv.gz 3.1 MB
EGAF50000107293 tsv.gz 1.9 MB
EGAF50000107294 tsv.gz 3.4 MB
EGAF50000107295 tsv.gz 3.0 MB
EGAF50000107296 tsv.gz 2.3 MB
EGAF50000107297 tsv.gz 3.6 MB
EGAF50000107298 tsv.gz 2.8 MB
EGAF50000107299 tsv.gz 1.8 MB
EGAF50000107300 tsv.gz 4.3 MB
EGAF50000107301 tsv.gz 2.7 MB
EGAF50000107302 tsv.gz 3.3 MB
EGAF50000107303 tsv.gz 1.5 MB
EGAF50000107304 tsv.gz 3.5 MB
EGAF50000107305 tsv.gz 2.8 MB
EGAF50000107306 tsv.gz 4.0 MB
EGAF50000107307 tsv.gz 4.0 MB
EGAF50000107308 tsv.gz 4.1 MB
EGAF50000107309 tsv.gz 1.6 MB
EGAF50000107310 tsv.gz 3.1 MB
EGAF50000107311 tsv.gz 3.3 MB
EGAF50000107312 tsv.gz 3.2 MB
EGAF50000107313 tsv.gz 2.9 MB
EGAF50000107314 tsv.gz 1.5 MB
EGAF50000107315 tsv.gz 1.4 MB
EGAF50000107316 tsv.gz 2.6 MB
EGAF50000107317 tsv.gz 4.3 MB
EGAF50000107318 tsv.gz 4.0 MB
EGAF50000107319 tsv.gz 3.5 MB
EGAF50000107320 tsv.gz 3.1 MB
EGAF50000107321 tsv.gz 2.0 MB
EGAF50000107322 tsv.gz 4.0 MB
EGAF50000107323 tsv.gz 2.4 MB
EGAF50000107324 tsv.gz 1.9 MB
EGAF50000107325 tsv.gz 3.0 MB
EGAF50000107326 tsv.gz 3.3 MB
EGAF50000107327 tsv.gz 3.9 MB
EGAF50000107328 tsv.gz 3.0 MB
EGAF50000107329 tsv.gz 3.4 MB
EGAF50000107330 tsv.gz 2.6 MB
EGAF50000107331 tsv.gz 3.1 MB
EGAF50000107332 tsv.gz 3.3 MB
EGAF50000107333 tsv.gz 2.8 MB
EGAF50000107334 tsv.gz 2.2 MB
EGAF50000107335 tsv.gz 3.8 MB
EGAF50000107336 tsv.gz 2.6 MB
EGAF50000107337 tsv.gz 1.7 MB
EGAF50000107338 tsv.gz 2.2 MB
EGAF50000107339 tsv.gz 3.7 MB
EGAF50000107340 tsv.gz 1.5 MB
EGAF50000107341 tsv.gz 2.9 MB
EGAF50000107342 tsv.gz 4.4 MB
EGAF50000107343 tsv.gz 4.0 MB
EGAF50000107344 tsv.gz 3.4 MB
EGAF50000107345 tsv.gz 4.2 MB
EGAF50000107346 tsv.gz 2.1 MB
EGAF50000107347 tsv.gz 3.5 MB
EGAF50000107348 tsv.gz 2.6 MB
EGAF50000107349 tsv.gz 3.6 MB
EGAF50000107350 tsv.gz 3.0 MB
EGAF50000107351 tsv.gz 2.9 MB
EGAF50000107352 tsv.gz 4.2 MB
EGAF50000107353 tsv.gz 3.1 MB
EGAF50000107354 tsv.gz 3.2 MB
EGAF50000107355 tsv.gz 1.1 MB
EGAF50000107356 tsv.gz 4.1 MB
EGAF50000107357 tsv.gz 2.0 MB
EGAF50000107358 tsv.gz 3.1 MB
EGAF50000107359 tsv.gz 3.0 MB
EGAF50000107360 tsv.gz 2.6 MB
EGAF50000107361 tsv.gz 3.6 MB
EGAF50000107362 tsv.gz 1.9 MB
EGAF50000107363 tsv.gz 3.4 MB
EGAF50000107364 tsv.gz 3.4 MB
EGAF50000107365 tsv.gz 2.3 MB
EGAF50000107366 tsv.gz 3.1 MB
EGAF50000107367 tsv.gz 2.4 MB
EGAF50000107368 tsv.gz 2.7 MB
EGAF50000107369 tsv.gz 3.5 MB
EGAF50000107370 tsv.gz 2.6 MB
EGAF50000107371 tsv.gz 1.5 MB
EGAF50000107372 tsv.gz 2.2 MB
EGAF50000107373 tsv.gz 3.6 MB
EGAF50000107374 tsv.gz 3.0 MB
EGAF50000107375 tsv.gz 2.3 MB
EGAF50000107376 tsv.gz 2.4 MB
EGAF50000107377 tsv.gz 3.3 MB
EGAF50000107378 tsv.gz 1.9 MB
EGAF50000107379 tsv.gz 3.0 MB
EGAF50000107380 tsv.gz 2.6 MB
EGAF50000107381 tsv.gz 1.6 MB
EGAF50000107382 tsv.gz 2.5 MB
EGAF50000107383 tsv.gz 2.7 MB
EGAF50000107384 tsv.gz 3.2 MB
EGAF50000107385 tsv.gz 1.8 MB
EGAF50000107386 tsv.gz 2.6 MB
EGAF50000107387 tsv.gz 2.7 MB
EGAF50000107388 tsv.gz 2.8 MB
EGAF50000107389 tsv.gz 2.7 MB
EGAF50000107390 tsv.gz 2.0 MB
EGAF50000107391 tsv.gz 2.4 MB
EGAF50000107392 tsv.gz 3.4 MB
EGAF50000107393 tsv.gz 944.1 kB
EGAF50000107394 tsv.gz 3.1 MB
EGAF50000107395 tsv.gz 1.7 MB
EGAF50000107396 tsv.gz 2.6 MB
EGAF50000107397 tsv.gz 2.0 MB
EGAF50000107398 tsv.gz 3.3 MB
EGAF50000107399 tsv.gz 2.6 MB
EGAF50000107400 tsv.gz 2.4 MB
EGAF50000107401 tsv.gz 4.2 MB
EGAF50000107402 tsv.gz 2.4 MB
EGAF50000107403 tsv.gz 1.7 MB
EGAF50000107404 tsv.gz 2.0 MB
EGAF50000107405 tsv.gz 2.8 MB
EGAF50000107406 tsv.gz 2.9 MB
EGAF50000107407 tsv.gz 2.7 MB
EGAF50000107408 tsv.gz 3.2 MB
EGAF50000107409 tsv.gz 3.2 MB
EGAF50000107410 tsv.gz 3.4 MB
EGAF50000107411 tsv.gz 2.2 MB
EGAF50000107412 tsv.gz 3.0 MB
EGAF50000107413 tsv.gz 2.8 MB
EGAF50000107414 tsv.gz 3.0 MB
EGAF50000107415 tsv.gz 3.0 MB
EGAF50000107416 tsv.gz 2.8 MB
EGAF50000107417 tsv.gz 2.0 MB
EGAF50000107418 tsv.gz 2.8 MB
EGAF50000107419 tsv.gz 3.5 MB
EGAF50000107420 tsv.gz 2.8 MB
EGAF50000107421 tsv.gz 2.7 MB
EGAF50000107422 tsv.gz 3.0 MB
EGAF50000107423 tsv.gz 3.0 MB
EGAF50000107424 tsv.gz 2.3 MB
EGAF50000107425 tsv.gz 1.8 MB
EGAF50000107426 tsv.gz 3.3 MB
EGAF50000107427 tsv.gz 2.7 MB
EGAF50000107428 tsv.gz 3.5 MB
EGAF50000107429 tsv.gz 2.3 MB
EGAF50000107430 tsv.gz 2.9 MB
EGAF50000107431 tsv.gz 3.0 MB
EGAF50000107432 tsv.gz 2.0 MB
EGAF50000107433 tsv.gz 1.9 MB
EGAF50000107434 tsv.gz 3.0 MB
EGAF50000107435 tsv.gz 3.6 MB
EGAF50000107436 tsv.gz 684.7 kB
EGAF50000107437 tsv.gz 2.8 MB
EGAF50000107438 tsv.gz 2.2 MB
EGAF50000107439 tsv.gz 3.1 MB
EGAF50000107440 tsv.gz 920.0 kB
EGAF50000107441 tsv.gz 3.4 MB
EGAF50000107442 tsv.gz 3.7 MB
EGAF50000107443 tsv.gz 2.6 MB
EGAF50000107444 tsv.gz 2.3 MB
EGAF50000107445 tsv.gz 2.5 MB
EGAF50000107446 tsv.gz 2.9 MB
EGAF50000107447 tsv.gz 1.9 MB
EGAF50000107448 tsv.gz 4.0 MB
EGAF50000107449 tsv.gz 836.5 kB
EGAF50000107450 tsv.gz 2.0 MB
EGAF50000107451 tsv.gz 1.7 MB
EGAF50000107452 tsv.gz 2.9 MB
EGAF50000107453 tsv.gz 2.3 MB
EGAF50000107454 tsv.gz 2.6 MB
EGAF50000107455 tsv.gz 2.3 MB
EGAF50000107456 tsv.gz 2.3 MB
EGAF50000108483 tsv.gz 2.7 MB
EGAF50000108484 tsv.gz 3.1 MB
EGAF50000108485 tsv.gz 2.4 MB
EGAF50000108486 tsv.gz 3.3 MB
EGAF50000108487 tsv.gz 1.6 MB
EGAF50000108488 tsv.gz 2.9 MB
EGAF50000108489 tsv.gz 2.9 MB
EGAF50000108490 tsv.gz 1.2 MB
173 Files (476.9 MB)