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DAC for Oncogenomics QIMR Berghofer

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Peter Johansson
peter.johansson@qimrberghofer.edu.au

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This DAC controls 7 datasets

Dataset ID	Description	Technology	Samples
EGAD00001004496	Tumour and control from a patient with uveal melanoma with a MBD4 germline mutation. Samples were whole exome sequenced.	Illumina HiSeq 2000	2
EGAD00001010039	Whole-exome sequencing was performed on DNA extracted from blood samples of 50 children diagnosed with cutaneous melanoma prior to 18 years of age. Patients were all diagnosed in Queensland, Australia, and self-reported as of European descent. Sequencing was done the Illumina platform using SureSelct V7 Post capture kits.	Illumina NovaSeq 6000	6
EGAD00001011676	Germline BAMs from blood/saliva samples from patients diagnosed with both uveal and cutaneous patients. Reads have been aligned, deduplicated and recalibrated.	Illumina HiSeq 2000 Illumina NovaSeq 6000	81
EGAD50000001868	This dataset contains sequence data from 154 patients in Australia diagnosed with cutaneous melanoma before the age of 20. Each patient was exome sequenced on the illumina platform. Generated sequence reads were aligned against version 19 of the human genome assembly and stored in bam files made available here.	Illumina HiSeq X Illumina NovaSeq 6000	154
EGAD50000002153	This dataset contains whole-exome sequence data from four individuals in a high-density melanoma family. Sequences were aligned against human reference genome HG19 using BWA.	Illumina HiSeq 2000	4
EGAD50000002154	This dataset contains whole-genome sequence data from individuals in a high-density melanoma family. Sequences were aligned againt the human reference genome HG19 using BWA.	Illumina HiSeq 2000	10
EGAD50000002155	This dataset contains PacBio long-read sequence data from two individuals with a chr9p.21 structural variant and two controls. Sequences were aligned againt the human reference genome HG38.	unspecified	4