Human Phenotype project Data Access Commitee

Eran Segal
eran.segal@weizmann.ac.il

Request Access

Dataset ID	Description	Technology	Samples
EGAD00001010925	This dataset includes metagenomic sequencing of faecal samples from 7,190 Israeli individuals. Single-end sequencing was performed using a NovaSeq sequencing platform (Illumina).	Illumina NovaSeq 6000	7190
EGAD00010002714	Dataset contains imputed SNP genetics data for human phenotype project https://humanphenotypeproject.org/. The samples are genotypes of 8958 individuals that underwent genetic sequencing based on buccal swab.Sequencing is performed at Neogen GeneSeek Laboratories using Illumina Novaseq at low-pass, targeting coverage levels of 0.5Ã— and 1Ã—. Imputation was done using loimpute-v0.1.0 over the aligned reads. Imputation is done for the autosomal chromosomes (1-22) using The 1000 Genomes phase 3 haplotypes (1KGP3) as a reference panel. The samples are provided in merged PLINK 1 binaries (.bed/.bim/.fam)	Gencove	8958
EGAD50000002532	Raw metagenomic sequencing data from oral swab samples collected as part of the Human Phenotype Project (HPP) longitudinal cohort study at the Weizmann Institute of Science. The dataset comprises 7,948 single-end FASTQ files generated using Gencove low-pass whole genome sequencing. Samples represent the oral microbiome of healthy adult participants. Data access is restricted in accordance with participant informed consent.	unspecified	7948