About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Low-coverage Whole Genome Sequencing, Colorectal adenomas, NKI-AvL TGO series Stool-Proteomics

For this tissue dataset, we applied low-pass whole genome sequencing to 98 non-advanced and advanced adenomas. As small number of lesions was sequenced multiple times, this dataset consists of 103 fastq files. These adenomas were classified as lesions with low-risk or high-risk of progression, according to the presence of specific DNA copy number changes (Carvalho et al, CancerPrevRes, 2018).

Request Access

Data Access Policy of NKI-AvL TGO

Data Access Policy of NKI-AvL TGO To request access to this specific dataset, and in order to comply with local and (inter)national regulations, please follow the steps described below: 1. Please fill in the information requested on the website: ega.nki.nl 2. Once you’ve submitted this information, the Data Access Committee (DAC) and the NKI-AVL Internal Review Board (IRB) will review your planned study and its goals and judge whether it is competing with our interests. The DAC and IRB can approve or decline your request or request a modification. 3. Upon approval by the IRB, you will receive a Data Transfer Agreement (DTA) that needs to be filled in and signed by the legal representative of your institute / company. 4. Upon acceptance of a signed DTA by our Knowledge Transfer & Contracting Office (KT&C), your party will receive a copy signed by our legal representative, and you will need to submit your access request via the EGA website

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002953 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001993546 fastq.gz 646.4 MB Report
EGAF00001993547 fastq.gz 349.6 MB Report
EGAF00001993548 fastq.gz 467.8 MB Report
EGAF00001993549 fastq.gz 642.5 MB Report
EGAF00001993550 fastq.gz 342.6 MB Report
EGAF00001993551 fastq.gz 490.8 MB Report
EGAF00001993552 fastq.gz 472.0 MB Report
EGAF00001993553 fastq.gz 591.5 MB Report
EGAF00001993554 fastq.gz 296.0 MB Report
EGAF00001993555 fastq.gz 281.5 MB Report
EGAF00001993556 fastq.gz 244.1 MB Report
EGAF00001993557 fastq.gz 339.5 MB Report
EGAF00001993558 fastq.gz 531.6 MB Report
EGAF00001993559 fastq.gz 155.8 MB Report
EGAF00001993560 fastq.gz 345.7 MB Report
EGAF00001993561 fastq.gz 117.8 MB Report
EGAF00001993562 fastq.gz 430.8 MB Report
EGAF00001993563 fastq.gz 260.9 MB Report
EGAF00001993564 fastq.gz 524.5 MB Report
EGAF00001993565 fastq.gz 422.1 MB Report
EGAF00001993566 fastq.gz 471.7 MB Report
EGAF00001993567 fastq.gz 212.3 MB Report
EGAF00001993568 fastq.gz 346.7 MB Report
EGAF00001993569 fastq.gz 451.3 MB Report
EGAF00001993570 fastq.gz 310.1 MB Report
EGAF00001993571 fastq.gz 286.8 MB Report
EGAF00001993572 fastq.gz 344.2 MB Report
EGAF00001993573 fastq.gz 360.7 MB Report
EGAF00001993574 fastq.gz 302.4 MB Report
EGAF00001993575 fastq.gz 385.2 MB Report
EGAF00001993576 fastq.gz 524.4 MB Report
EGAF00001993577 fastq.gz 305.6 MB Report
EGAF00001993578 fastq.gz 502.1 MB Report
EGAF00001993579 fastq.gz 257.1 MB Report
EGAF00001993580 fastq.gz 532.4 MB Report
EGAF00001993581 fastq.gz 592.8 MB Report
EGAF00001993582 fastq.gz 328.2 MB Report
EGAF00001993583 fastq.gz 326.7 MB Report
EGAF00001993584 fastq.gz 195.3 MB Report
EGAF00001993585 fastq.gz 335.7 MB Report
EGAF00001993586 fastq.gz 208.1 MB Report
EGAF00001993587 fastq.gz 394.5 MB Report
EGAF00001993588 fastq.gz 607.0 MB Report
EGAF00001993589 fastq.gz 249.0 MB Report
EGAF00001993590 fastq.gz 307.8 MB Report
EGAF00001993591 fastq.gz 255.5 MB Report
EGAF00001993592 fastq.gz 520.2 MB Report
EGAF00001993593 fastq.gz 206.0 MB Report
EGAF00001993594 fastq.gz 557.8 MB Report
EGAF00001993595 fastq.gz 193.5 MB Report
EGAF00001993596 fastq.gz 243.3 MB Report
EGAF00001993597 fastq.gz 280.8 MB Report
EGAF00001993598 fastq.gz 257.4 MB Report
EGAF00001993599 fastq.gz 441.0 MB Report
EGAF00001993600 fastq.gz 156.2 MB Report
EGAF00001993601 fastq.gz 337.2 MB Report
EGAF00001993602 fastq.gz 218.3 MB Report
EGAF00001993603 fastq.gz 273.4 MB Report
EGAF00001993604 fastq.gz 139.7 MB Report
EGAF00001993605 fastq.gz 410.2 MB Report
EGAF00001993606 fastq.gz 323.2 MB Report
EGAF00001993607 fastq.gz 392.6 MB Report
EGAF00001993608 fastq.gz 207.6 MB Report
EGAF00001993609 fastq.gz 235.4 MB Report
EGAF00001993610 fastq.gz 560.1 MB Report
EGAF00001993611 fastq.gz 637.5 MB Report
EGAF00001993612 fastq.gz 285.9 MB Report
EGAF00001993613 fastq.gz 269.6 MB Report
EGAF00001993614 fastq.gz 528.0 MB Report
EGAF00001993615 fastq.gz 281.8 MB Report
EGAF00001993616 fastq.gz 235.5 MB Report
EGAF00001993617 fastq.gz 264.8 MB Report
EGAF00001993618 fastq.gz 250.2 MB Report
EGAF00001993619 fastq.gz 486.2 MB Report
EGAF00001993620 fastq.gz 335.9 MB Report
EGAF00001993621 fastq.gz 352.9 MB Report
EGAF00001993622 fastq.gz 362.7 MB Report
EGAF00001993623 fastq.gz 295.5 MB Report
EGAF00001993624 fastq.gz 372.1 MB Report
EGAF00001993625 fastq.gz 427.6 MB Report
EGAF00001993626 fastq.gz 449.6 MB Report
EGAF00001993627 fastq.gz 176.9 MB Report
EGAF00001993628 fastq.gz 535.1 MB Report
EGAF00001993629 fastq.gz 294.5 MB Report
EGAF00001993630 fastq.gz 370.2 MB Report
EGAF00001993631 fastq.gz 307.3 MB Report
EGAF00001993632 fastq.gz 336.7 MB Report
EGAF00001993633 fastq.gz 292.7 MB Report
EGAF00001993634 fastq.gz 461.5 MB Report
EGAF00001993635 fastq.gz 262.3 MB Report
EGAF00001993636 fastq.gz 443.7 MB Report
EGAF00001993637 fastq.gz 410.5 MB Report
EGAF00001993638 fastq.gz 258.1 MB Report
EGAF00001993639 fastq.gz 591.6 MB Report
EGAF00001993640 fastq.gz 635.4 MB Report
EGAF00001993641 fastq.gz 542.1 MB Report
EGAF00001993642 fastq.gz 506.3 MB Report
EGAF00001993643 fastq.gz 584.6 MB Report
EGAF00001993644 fastq.gz 361.8 MB Report
EGAF00001993645 fastq.gz 489.9 MB Report
EGAF00001993646 fastq.gz 330.2 MB Report
EGAF00001993647 fastq.gz 155.1 MB Report
EGAF00001993648 fastq.gz 400.8 MB Report
103 Files (37.9 GB)