About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Low-coverage Whole Genome Sequencing, Colorectal advanced adenomas, NKI-AvL TGO COCOS series

For this tissue dataset, we applied low-pass whole genome sequencing to 96 advanced adenomas. Advanced adenomas were classified as lesions with low-risk or high-risk of progression, according to the presence of specific DNA copy number changes (Carvalho et al, CancerPrevRes, 2018).

Request Access

Data Access Policy of NKI-AvL TGO

Data Access Policy of NKI-AvL TGO To request access to this specific dataset, and in order to comply with local and (inter)national regulations, please follow the steps described below: 1. Please fill in the information requested on the website: ega.nki.nl 2. Once you’ve submitted this information, the Data Access Committee (DAC) and the NKI-AVL Internal Review Board (IRB) will review your planned study and its goals and judge whether it is competing with our interests. The DAC and IRB can approve or decline your request or request a modification. 3. Upon approval by the IRB, you will receive a Data Transfer Agreement (DTA) that needs to be filled in and signed by the legal representative of your institute / company. 4. Upon acceptance of a signed DTA by our Knowledge Transfer & Contracting Office (KT&C), your party will receive a copy signed by our legal representative, and you will need to submit your access request via the EGA website

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002952 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001993941 fastq.gz 261.0 MB Report
EGAF00001993942 fastq.gz 220.9 MB Report
EGAF00001993943 fastq.gz 278.9 MB Report
EGAF00001993944 fastq.gz 157.3 MB Report
EGAF00001993945 fastq.gz 324.7 MB Report
EGAF00001993946 fastq.gz 369.8 MB Report
EGAF00001993947 fastq.gz 319.3 MB Report
EGAF00001993948 fastq.gz 239.9 MB Report
EGAF00001993949 fastq.gz 284.3 MB Report
EGAF00001993950 fastq.gz 420.5 MB Report
EGAF00001993951 fastq.gz 251.9 MB Report
EGAF00001993952 fastq.gz 407.4 MB Report
EGAF00001993953 fastq.gz 430.1 MB Report
EGAF00001993954 fastq.gz 286.7 MB Report
EGAF00001993955 fastq.gz 352.7 MB Report
EGAF00001993956 fastq.gz 501.4 MB Report
EGAF00001993957 fastq.gz 243.7 MB Report
EGAF00001993958 fastq.gz 381.1 MB Report
EGAF00001993959 fastq.gz 186.9 MB Report
EGAF00001993960 fastq.gz 200.1 MB Report
EGAF00001993961 fastq.gz 152.3 MB Report
EGAF00001993962 fastq.gz 302.1 MB Report
EGAF00001993963 fastq.gz 230.8 MB Report
EGAF00001993964 fastq.gz 238.8 MB Report
EGAF00001993965 fastq.gz 285.9 MB Report
EGAF00001993966 fastq.gz 392.4 MB Report
EGAF00001993967 fastq.gz 281.3 MB Report
EGAF00001993968 fastq.gz 282.2 MB Report
EGAF00001993969 fastq.gz 369.0 MB Report
EGAF00001993970 fastq.gz 351.8 MB Report
EGAF00001993971 fastq.gz 348.3 MB Report
EGAF00001993972 fastq.gz 261.1 MB Report
EGAF00001993973 fastq.gz 322.2 MB Report
EGAF00001993974 fastq.gz 258.5 MB Report
EGAF00001993975 fastq.gz 302.8 MB Report
EGAF00001993976 fastq.gz 273.2 MB Report
EGAF00001993977 fastq.gz 313.0 MB Report
EGAF00001993978 fastq.gz 191.3 MB Report
EGAF00001993979 fastq.gz 290.1 MB Report
EGAF00001993980 fastq.gz 297.5 MB Report
EGAF00001993981 fastq.gz 288.9 MB Report
EGAF00001993982 fastq.gz 284.8 MB Report
EGAF00001993983 fastq.gz 333.6 MB Report
EGAF00001993984 fastq.gz 331.9 MB Report
EGAF00001993985 fastq.gz 135.5 MB Report
EGAF00001993986 fastq.gz 288.1 MB Report
EGAF00001993987 fastq.gz 358.0 MB Report
EGAF00001993988 fastq.gz 347.7 MB Report
EGAF00001993989 fastq.gz 372.9 MB Report
EGAF00001993990 fastq.gz 340.0 MB Report
EGAF00001993991 fastq.gz 173.2 MB Report
EGAF00001993992 fastq.gz 303.6 MB Report
EGAF00001993993 fastq.gz 232.3 MB Report
EGAF00001993994 fastq.gz 297.8 MB Report
EGAF00001993995 fastq.gz 306.6 MB Report
EGAF00001993996 fastq.gz 315.5 MB Report
EGAF00001993997 fastq.gz 275.6 MB Report
EGAF00001993998 fastq.gz 323.1 MB Report
EGAF00001993999 fastq.gz 385.4 MB Report
EGAF00001994000 fastq.gz 329.2 MB Report
EGAF00001994001 fastq.gz 326.3 MB Report
EGAF00001994002 fastq.gz 383.4 MB Report
EGAF00001994003 fastq.gz 317.0 MB Report
EGAF00001994004 fastq.gz 311.5 MB Report
EGAF00001994005 fastq.gz 381.3 MB Report
EGAF00001994006 fastq.gz 362.0 MB Report
EGAF00001994007 fastq.gz 390.5 MB Report
EGAF00001994008 fastq.gz 382.5 MB Report
EGAF00001994009 fastq.gz 735.3 MB Report
EGAF00001994010 fastq.gz 299.0 MB Report
EGAF00001994011 fastq.gz 385.3 MB Report
EGAF00001994012 fastq.gz 277.4 MB Report
EGAF00001994013 fastq.gz 396.1 MB Report
EGAF00001994014 fastq.gz 349.1 MB Report
EGAF00001994015 fastq.gz 324.6 MB Report
EGAF00001994016 fastq.gz 204.4 MB Report
EGAF00001994017 fastq.gz 364.9 MB Report
EGAF00001994018 fastq.gz 361.1 MB Report
EGAF00001994019 fastq.gz 268.9 MB Report
EGAF00001994020 fastq.gz 380.9 MB Report
EGAF00001994021 fastq.gz 382.9 MB Report
EGAF00001994022 fastq.gz 327.6 MB Report
EGAF00001994023 fastq.gz 275.1 MB Report
EGAF00001994024 fastq.gz 402.2 MB Report
EGAF00001994025 fastq.gz 409.2 MB Report
EGAF00001994026 fastq.gz 324.4 MB Report
EGAF00001994027 fastq.gz 348.4 MB Report
EGAF00001994028 fastq.gz 306.2 MB Report
EGAF00001994029 fastq.gz 378.4 MB Report
EGAF00001994030 fastq.gz 351.5 MB Report
EGAF00001994031 fastq.gz 290.3 MB Report
EGAF00001994032 fastq.gz 324.6 MB Report
EGAF00001994033 fastq.gz 337.6 MB Report
EGAF00001994034 fastq.gz 312.0 MB Report
EGAF00001994035 fastq.gz 376.9 MB Report
EGAF00001994036 fastq.gz 356.4 MB Report
96 Files (30.6 GB)