About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Exome_pituitary_adenoma

Whole‐exome sequencing was performed using NimbleGen MedExome capture (Roche NimbleGen, Madison, WI, USA) from 1 μg of high quality genomic DNA, followed by sequencing of libraries using paired-end mode (2x 75bp) on a Nextseq 500 platform (Illumina, San Diego, CA, USA), at the Genomics Platform of the Cochin Institute. Reads were aligned on hg19 (GRCh37) using BWA V0.7.17.

Request Access

DATA ACCESS AGREEMENT

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom AREP grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: AREP and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. AREP: Association pour la Recherche et l’Enseignement en Pathologie Laboratoire de Pathologie Hopital Ambroise Paré 9 avenue Charles de Gaulle 92104 Boulogne-Billancourt cedex 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify AREP within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify AREP prior to any significant changes to the protocol for the Project. 14. The User Institution will notify AREP as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. AREP may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than AREP. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of France and shall be subject to the exclusive jurisdiction of the French courts. Specific limitations on areas of research This research is aimed at studying the genomic alterations occurring in pituitary adenomas. Therefore these data can only be used for analyzing the SOMATIC genome and epigenome, formally EXCLUDING any study focusing on the GERMLINE genome of individuals included in this project.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003642 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00002455438 bam 4.1 GB Report
EGAF00002455439 bam 2.0 GB Report
EGAF00002455440 bam 7.1 GB Report
EGAF00002455441 bam 3.0 GB Report
EGAF00002455442 bam 4.6 GB Report
EGAF00002455443 bam 6.0 GB Report
EGAF00002455444 bam 4.0 GB Report
EGAF00002455445 bam 8.5 GB Report
EGAF00002455446 bam 2.5 GB Report
EGAF00002455447 bam 3.7 GB Report
EGAF00002455448 bam 3.2 GB Report
EGAF00002455449 bam 4.8 GB Report
EGAF00002455488 bam 3.0 GB Report
EGAF00002455489 bam 3.6 GB Report
EGAF00002455490 bam 3.8 GB Report
EGAF00002455491 bam 3.2 GB Report
EGAF00002455492 bam 4.0 GB Report
EGAF00002455493 bam 7.3 GB Report
EGAF00002455494 bam 4.3 GB Report
EGAF00002455495 bam 4.5 GB Report
EGAF00002455496 bam 4.8 GB Report
EGAF00002455497 bam 1.1 GB Report
EGAF00002455498 bam 3.8 GB Report
EGAF00002455499 bam 5.0 GB Report
EGAF00002455500 bam 4.1 GB Report
EGAF00002455501 bam 4.5 GB Report
EGAF00002455502 bam 3.8 GB Report
EGAF00002455503 bam 4.4 GB Report
EGAF00002455504 bam 3.5 GB Report
EGAF00002455505 bam 4.0 GB Report
EGAF00002455506 bam 3.8 GB Report
EGAF00002455507 fastq.gz 10.0 GB Report
EGAF00002455508 fastq.gz 10.0 GB Report
EGAF00002455509 bam 4.0 GB Report
EGAF00002455510 bam 4.9 GB Report
EGAF00002455511 fastq.gz 5.6 GB Report
EGAF00002455512 fastq.gz 7.5 GB Report
EGAF00002455513 bam 3.7 GB Report
EGAF00002455552 fastq.gz 17.9 GB Report
EGAF00002455553 fastq.gz 17.9 GB Report
EGAF00002455554 bam 5.3 GB Report
EGAF00002455555 fastq.gz 7.3 GB Report
EGAF00002455556 fastq.gz 7.3 GB Report
EGAF00002455557 bam 4.2 GB Report
EGAF00002455558 fastq.gz 11.7 GB Report
EGAF00002455559 fastq.gz 11.7 GB Report
EGAF00002455560 bam 10.4 GB Report
EGAF00002455561 fastq.gz 16.3 GB Report
EGAF00002455562 fastq.gz 16.3 GB Report
EGAF00002455563 bam 6.7 GB
EGAF00002455564 fastq.gz 10.1 GB Report
EGAF00002455565 fastq.gz 10.1 GB Report
EGAF00002455566 bam 4.2 GB Report
EGAF00002455567 fastq.gz 20.4 GB Report
EGAF00002455568 fastq.gz 20.4 GB Report
EGAF00002455569 bam 5.6 GB Report
EGAF00002455570 fastq.gz 9.3 GB Report
EGAF00002455571 fastq.gz 9.3 GB Report
EGAF00002455572 bam 3.1 GB Report
EGAF00002455573 fastq.gz 8.7 GB Report
EGAF00002455574 fastq.gz 8.7 GB Report
EGAF00002455575 bam 5.3 GB Report
EGAF00002455576 bam 5.8 GB Report
EGAF00002455577 fastq.gz 8.9 GB Report
EGAF00002455578 fastq.gz 8.9 GB Report
EGAF00002455579 bam 3.4 GB Report
EGAF00002455580 fastq.gz 11.8 GB Report
EGAF00002455581 fastq.gz 11.8 GB Report
EGAF00002455582 bam 3.5 GB Report
EGAF00002455583 fastq.gz 8.2 GB Report
EGAF00002455584 fastq.gz 8.2 GB Report
EGAF00002455605 bam 4.8 GB Report
EGAF00002455606 fastq.gz 8.9 GB Report
EGAF00002455607 fastq.gz 8.9 GB Report
EGAF00002455608 bam 4.7 GB Report
EGAF00002455609 fastq.gz 9.6 GB Report
EGAF00002455610 fastq.gz 9.6 GB Report
EGAF00002455611 bam 3.4 GB Report
EGAF00002455612 fastq.gz 11.4 GB Report
EGAF00002455613 fastq.gz 11.4 GB Report
EGAF00002455614 bam 9.2 GB Report
EGAF00002455615 fastq.gz 14.1 GB Report
EGAF00002455616 fastq.gz 14.1 GB Report
EGAF00002455617 bam 4.0 GB Report
EGAF00002455618 fastq.gz 18.8 GB Report
EGAF00002455619 fastq.gz 18.8 GB Report
EGAF00002455620 bam 4.4 GB Report
EGAF00002455621 fastq.gz 10.6 GB Report
EGAF00002455622 fastq.gz 10.6 GB Report
EGAF00002455623 bam 5.2 GB Report
EGAF00002455624 fastq.gz 11.8 GB Report
EGAF00002455625 fastq.gz 11.8 GB Report
EGAF00002455626 bam 2.2 GB
EGAF00002455627 fastq.gz 12.4 GB Report
EGAF00002455628 fastq.gz 12.4 GB Report
EGAF00002455629 bam 3.4 GB Report
EGAF00002455630 fastq.gz 2.6 GB Report
EGAF00002455631 fastq.gz 2.6 GB Report
EGAF00002455632 bam 8.3 GB Report
EGAF00002455633 fastq.gz 9.2 GB Report
EGAF00002455634 fastq.gz 9.2 GB Report
EGAF00002455635 bam 3.5 GB Report
EGAF00002455636 fastq.gz 12.8 GB Report
EGAF00002455637 fastq.gz 12.8 GB Report
EGAF00002455663 bam 4.7 GB Report
EGAF00002455664 fastq.gz 9.9 GB Report
EGAF00002455665 fastq.gz 9.9 GB Report
EGAF00002455666 bam 6.9 GB Report
EGAF00002455667 fastq.gz 10.8 GB Report
EGAF00002455668 fastq.gz 10.8 GB Report
EGAF00002455669 bam 3.7 GB Report
EGAF00002455670 bam 3.8 GB Report
EGAF00002455671 fastq.gz 9.8 GB Report
EGAF00002455672 fastq.gz 9.8 GB Report
EGAF00002455673 fastq.gz 27.8 GB Report
EGAF00002455674 fastq.gz 27.8 GB Report
EGAF00002455675 bam 6.8 GB Report
EGAF00002455676 fastq.gz 8.5 GB Report
EGAF00002455677 fastq.gz 8.5 GB Report
EGAF00002455678 bam 5.2 GB Report
EGAF00002455679 bam 10.9 GB Report
EGAF00002455680 fastq.gz 9.9 GB Report
EGAF00002455681 fastq.gz 9.9 GB Report
EGAF00002455682 bam 6.1 GB Report
EGAF00002455683 fastq.gz 9.6 GB Report
EGAF00002455684 fastq.gz 9.6 GB Report
EGAF00002455685 bam 4.5 GB Report
EGAF00002455686 fastq.gz 9.7 GB Report
EGAF00002455687 fastq.gz 9.7 GB Report
EGAF00002455688 bam 4.5 GB Report
EGAF00002455689 fastq.gz 12.0 GB Report
EGAF00002455690 fastq.gz 12.0 GB Report
EGAF00002455691 bam 4.8 GB Report
EGAF00002455692 fastq.gz 10.3 GB Report
EGAF00002455693 fastq.gz 10.3 GB Report
EGAF00002455694 bam 4.6 GB Report
EGAF00002455720 fastq.gz 12.9 GB Report
EGAF00002455721 fastq.gz 12.9 GB Report
EGAF00002455722 bam 5.4 GB Report
EGAF00002455723 fastq.gz 10.4 GB Report
EGAF00002455724 fastq.gz 10.4 GB Report
EGAF00002455725 bam 3.5 GB Report
EGAF00002455726 fastq.gz 26.1 GB Report
EGAF00002455727 fastq.gz 26.1 GB Report
EGAF00002455728 bam 4.2 GB Report
EGAF00002455729 fastq.gz 20.6 GB Report
EGAF00002455730 fastq.gz 20.6 GB Report
EGAF00002455731 bam 5.0 GB
EGAF00002455733 fastq.gz 10.0 GB Report
EGAF00002455734 fastq.gz 10.0 GB Report
EGAF00002455735 bam 3.8 GB Report
EGAF00002455737 fastq.gz 13.7 GB Report
EGAF00002455738 fastq.gz 13.7 GB Report
EGAF00002455739 bam 4.1 GB Report
EGAF00002455741 bam 4.0 GB Report
EGAF00002455742 fastq.gz 7.6 GB Report
EGAF00002455743 fastq.gz 7.6 GB Report
EGAF00002455745 bam 5.5 GB Report
EGAF00002455746 fastq.gz 13.9 GB Report
EGAF00002455747 fastq.gz 13.9 GB Report
EGAF00002455748 bam 5.1 GB Report
EGAF00002455750 fastq.gz 19.4 GB Report
EGAF00002455751 fastq.gz 19.4 GB Report
EGAF00002455778 bam 4.7 GB Report
EGAF00002455779 fastq.gz 8.6 GB Report
EGAF00002455780 fastq.gz 8.6 GB Report
EGAF00002455782 bam 4.4 GB Report
EGAF00002455783 fastq.gz 9.4 GB Report
EGAF00002455784 fastq.gz 9.4 GB Report
EGAF00002455785 bam 1.8 GB
EGAF00002455787 fastq.gz 11.7 GB Report
EGAF00002455788 fastq.gz 11.7 GB Report
EGAF00002455789 bam 4.6 GB Report
EGAF00002455791 fastq.gz 12.0 GB Report
EGAF00002455792 fastq.gz 12.0 GB Report
EGAF00002455793 bam 3.3 GB Report
EGAF00002455795 fastq.gz 9.3 GB Report
EGAF00002455796 fastq.gz 9.3 GB Report
EGAF00002455797 bam 4.8 GB Report
EGAF00002455799 fastq.gz 22.8 GB Report
EGAF00002455800 fastq.gz 22.8 GB Report
EGAF00002455801 bam 4.6 GB Report
EGAF00002455803 fastq.gz 9.7 GB Report
EGAF00002455804 fastq.gz 9.7 GB Report
EGAF00002455805 bam 5.1 GB Report
EGAF00002455832 fastq.gz 10.9 GB Report
EGAF00002455833 fastq.gz 10.9 GB Report
EGAF00002455834 bam 3.3 GB Report
EGAF00002455836 fastq.gz 14.1 GB Report
EGAF00002455837 fastq.gz 14.1 GB Report
EGAF00002455839 fastq.gz 14.4 GB Report
EGAF00002455840 fastq.gz 14.4 GB Report
EGAF00002455842 fastq.gz 9.1 GB Report
EGAF00002455843 fastq.gz 9.1 GB Report
EGAF00002455845 fastq.gz 20.9 GB Report
EGAF00002455846 fastq.gz 20.9 GB Report
EGAF00002455848 fastq.gz 9.6 GB Report
EGAF00002455849 fastq.gz 9.6 GB Report
EGAF00002455851 fastq.gz 11.7 GB Report
EGAF00002455852 fastq.gz 11.7 GB Report
EGAF00002455855 fastq.gz 18.8 GB Report
EGAF00002455856 fastq.gz 18.8 GB Report
EGAF00002455859 fastq.gz 9.4 GB Report
EGAF00002455860 fastq.gz 9.4 GB Report
EGAF00002455890 fastq.gz 9.7 GB Report
EGAF00002455891 fastq.gz 9.7 GB Report
EGAF00002455894 fastq.gz 17.6 GB Report
EGAF00002455895 fastq.gz 17.6 GB Report
EGAF00002455898 fastq.gz 13.8 GB Report
EGAF00002455899 fastq.gz 13.8 GB Report
EGAF00002455903 fastq.gz 27.7 GB Report
EGAF00002455904 fastq.gz 27.7 GB Report
EGAF00002455908 fastq.gz 14.5 GB Report
EGAF00002455909 fastq.gz 14.5 GB Report
EGAF00002455912 fastq.gz 10.9 GB Report
EGAF00002455913 fastq.gz 10.9 GB Report
EGAF00002455916 fastq.gz 11.5 GB Report
EGAF00002455917 fastq.gz 11.5 GB Report
EGAF00002455952 fastq.gz 11.9 GB Report
EGAF00002455953 fastq.gz 11.9 GB Report
EGAF00002455956 fastq.gz 11.7 GB Report
EGAF00002455957 fastq.gz 11.7 GB Report
EGAF00002455960 fastq.gz 13.7 GB Report
EGAF00002455961 fastq.gz 13.7 GB Report
EGAF00002455964 fastq.gz 12.8 GB Report
EGAF00002455965 fastq.gz 12.8 GB Report
EGAF00002455968 fastq.gz 10.2 GB Report
EGAF00002455969 fastq.gz 10.2 GB Report
EGAF00002455973 fastq.gz 18.3 GB Report
EGAF00002455974 fastq.gz 18.3 GB Report
EGAF00002455977 fastq.gz 9.7 GB Report
EGAF00002455978 fastq.gz 9.7 GB Report
EGAF00002456015 fastq.gz 10.5 GB Report
EGAF00002456016 fastq.gz 10.5 GB Report
EGAF00002456019 fastq.gz 11.1 GB Report
EGAF00002456020 fastq.gz 11.1 GB Report
EGAF00002456023 fastq.gz 13.7 GB Report
EGAF00002456024 fastq.gz 13.7 GB Report
EGAF00002456027 fastq.gz 12.6 GB Report
EGAF00002456028 fastq.gz 12.6 GB Report
EGAF00002456031 fastq.gz 11.9 GB Report
EGAF00002456032 fastq.gz 11.9 GB Report
EGAF00002456035 fastq.gz 10.9 GB Report
EGAF00002456036 fastq.gz 10.9 GB Report
EGAF00002456040 fastq.gz 8.4 GB Report
EGAF00002456041 fastq.gz 8.4 GB Report
EGAF00002456043 fastq.gz 12.6 GB Report
EGAF00002456044 fastq.gz 12.6 GB Report
EGAF00002456081 fastq.gz 8.9 GB Report
EGAF00002456082 fastq.gz 8.9 GB Report
EGAF00002456086 fastq.gz 12.2 GB Report
EGAF00002456087 fastq.gz 12.2 GB Report
EGAF00002456090 fastq.gz 15.9 GB Report
EGAF00002456091 fastq.gz 15.9 GB Report
EGAF00002456094 fastq.gz 12.8 GB Report
EGAF00002456095 fastq.gz 12.8 GB Report
EGAF00002456098 fastq.gz 8.7 GB Report
EGAF00002456099 fastq.gz 8.7 GB Report
258 Files (2.5 TB)