FFPE
The mutational status of 112 recurrently mutated genes in B-cell lymphoma was examined by targeted next-generation sequencing (NGS). Libraries were performed with 150 ng of genomic DNA (gDNA) obtained from formalin-fixed paraffin-embedded (FFPE) biopsy using molecular-barcoded library adapters (ThruPLEX Tag-seq kit; Takara) coupled with a custom hybridization capture based method (SureSelect XT Target Enrichment System Capture strategy, Agilent Technologies Inc.) and sequenced in a MiSeq instrument (Illumina, 2x150bp).
- 04/11/2020
- 45 samples
- DAC: EGAC00001001793
- Technology: Illumina MiSeq
DUO:0000005 version: 2019-01-07
general research use and clinical care
This data use limitation indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.
DUO:0000014 version: 2019-01-07
research use only
This data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
DUO:0000015 version: 2019-01-07
no general methods research
This data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms).
DUO:0000021 version: 2019-01-07
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000026 version: 2019-01-07
user specific restriction
This data use modifier indicates that use is limited to use by approved users.
DUO:0000027 version: 2019-01-07
project specific restriction
This data use modifier indicates that use is limited to use within an approved project.
Contact the DAC for additional information.
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004733 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00004834699 | bam | 577.3 MB | Report |
|
| EGAF00004834700 | bam | 517.7 MB | Report |
|
| EGAF00004834701 | bam | 738.9 MB | Report |
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| EGAF00004834703 | bam | 735.8 MB | Report |
|
| EGAF00004834704 | bam | 539.6 MB | Report |
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| EGAF00004834706 | bam | 653.2 MB | Report |
|
| EGAF00004834707 | bam | 406.7 MB | Report |
|
| EGAF00004834708 | bam | 601.3 MB | Report |
|
| EGAF00004834713 | bam | 633.4 MB | Report |
|
| EGAF00004834719 | bam | 626.9 MB | Report |
|
| EGAF00004834723 | bam | 1.1 GB | Report |
|
| EGAF00004834731 | bam | 575.5 MB | Report |
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| EGAF00004834735 | bam | 688.9 MB | Report |
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| EGAF00004834738 | bam | 501.8 MB | Report |
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| EGAF00004834740 | bam | 907.9 MB | Report |
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| EGAF00004834744 | bam | 397.5 MB | Report |
|
| EGAF00004834752 | bam | 401.4 MB | Report |
|
| EGAF00004834753 | bam | 509.7 MB | Report |
|
| EGAF00004834759 | bam | 393.6 MB | Report |
|
| EGAF00004834762 | bam | 43.4 MB | Report |
|
| EGAF00004834763 | bam | 417.8 MB | Report |
|
| EGAF00004834764 | bam | 405.5 MB | Report |
|
| EGAF00004834767 | bam | 592.8 MB | Report |
|
| EGAF00004834771 | bam | 1.3 GB | Report |
|
| EGAF00004834772 | bam | 628.5 MB | Report |
|
| EGAF00004834775 | bam | 454.1 MB | Report |
|
| EGAF00004834777 | bam | 480.4 MB | Report |
|
| EGAF00004834778 | bam | 314.0 MB | Report |
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| EGAF00004834779 | bam | 685.3 MB | Report |
|
| EGAF00004834782 | bam | 532.5 MB | Report |
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| EGAF00004834783 | bam | 1.2 GB | Report |
|
| EGAF00004834785 | bam | 618.8 MB | Report |
|
| EGAF00004834786 | bam | 535.2 MB | Report |
|
| EGAF00004834790 | bam | 995.9 MB | Report |
|
| EGAF00004834791 | bam | 1.6 GB | Report |
|
| EGAF00004834792 | bam | 308.0 MB | Report |
|
| EGAF00004834793 | bam | 600.6 MB | Report |
|
| EGAF00004834796 | bam | 639.6 MB | Report |
|
| EGAF00004834797 | bam | 694.2 MB | Report |
|
| EGAF00004834798 | bam | 637.4 MB | Report |
|
| EGAF00004834803 | bam | 454.1 MB | Report |
|
| EGAF00004834810 | bam | 594.1 MB | Report |
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| EGAF00004834819 | bam | 571.2 MB | Report |
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| EGAF00004834820 | bam | 548.3 MB | Report |
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| EGAF00004834822 | bam | 438.5 MB | Report |
|
| 45 Files (27.7 GB) | ||||