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Genetic-epigenetic tissue mapping for plasma DNA: applications in prenatal testing, transplantation and oncology

We developed Genetic-Epigenetic Tissue Mapping (GETMap) to determine the tissue composition of plasma DNA carrying genetic variants not present in the constitutional genome through comparing their methylation profiles with relevant tissues.

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Policy for Plasma DNA data sharing

The CUHK Circulating Nucleic Acids Research Group Data Access Agreement This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). The terms and conditions of access set out in this agreement apply both to the User and the User’s Institution (both as defined below). User is referred to within the agreement as “You” and the term “Your” will be construed accordingly. By signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. Definitions: Group means The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). Data means all and any human genetic data obtained by User or User’s Institution from the Group via the European Genome-phenome Archive. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. In the event that the Data Subject is legally incapable of giving an informed consent, such consent has been given by his/her legal guardian. User means a researcher whose User’s Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance by the Group. Data Access Committee means a committee assigned by the Group for reviewing and approving the data access application of the User. The committee consists of three or more investigators from the Group. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written, electronic, graphical, photographic, recorded (including oral recordings), and verbal presentations of research. User’s Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: By signing this agreement: 1. You agree to use the Data only for the advancement of medical and scientific research, according to the consent given by Data Subjects. 2. You agree not to use the Data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or in part, or any information/material derived from the Data, to others, except as reasonably necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same User’s Institution, the collaborator must make a separate application for access to the Data. 5. You agree to use the Data for the approved purpose and project described in your application only; use of the Data for a new purpose or project will require a new application and approval. 6. You agree to acknowledge in any work based in whole or in part on the Data, the publications from which the Data derives, the version of the Data, and the role of the Group. The wordings of the acknowledgement are “This study makes use of data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group, as reported by Chan et al in Clinical Chemistry (doi:10.1373/clinchem.2012.196014). 7. You accept that the Group, the original data creators, depositors or copyright holders, or the funders of the Group: a) make no warranties or representations with respect to the Data, including but not limited to its fitness for purpose, accuracy or comprehensiveness, the continued access to the Data without interruption; and b) accept no liability for any direct, indirect, consequential, special or incidental, damages or losses arising from or in connection with the use of the Data or this agreement. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that reproduction, except as reasonably required to carry out Your research with the Data in accordance with the approved purpose referred to in paragraph 5 above, or sale of all or part of the Data in any form is not permitted. 9. You agree that nothing in this agreement shall operate to transfer to You or to the User’s Institution any intellectual property rights relating to the Data. 10. You accept that this agreement will be terminated immediately by the Group without notice upon breach of any terms of this agreement by You and You agree to destroy any Data held when required. 11. You accept that it may be necessary for the Group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Group or its appointed agent will to inform You of any changes. You agree that Your continued use of the Data shall be deemed to represent your consent to any revised terms of the Agreement. 12. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User’s Institution. 13. You accept that the Data is protected by the privacy law in the relevant jurisdiction and that You are responsible for ensuring Your use of the Data is in compliance with any such applicable law. Notwithstanding the above, nothing in this agreement shall limit the rights of the Data Subjects under the Personal Data (Privacy) Ordinance (Cap 486) in Hong Kong. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the Personal Data (Privacy) Ordinance in Hong Kong. 14. This agreement shall be construed, interpreted and governed by the laws of Hong Kong Special Administrative Region.   For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User’s Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User’s Institution: ______________________________________ Date: ¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004788 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00005093072 fq.gz 12.8 GB Report
EGAF00005093073 fq.gz 15.3 GB Report
EGAF00005093074 fq.gz 12.2 GB Report
EGAF00005093075 fq.gz 14.5 GB Report
EGAF00005093076 fq.gz 12.3 GB Report
EGAF00005093077 fq.gz 14.4 GB Report
EGAF00005093078 fq.gz 12.3 GB Report
EGAF00005093079 fq.gz 14.5 GB Report
EGAF00005093080 fq.gz 12.1 GB Report
EGAF00005093081 fq.gz 14.1 GB Report
EGAF00005093082 fq.gz 12.2 GB Report
EGAF00005093083 fq.gz 14.3 GB Report
EGAF00005093084 fq.gz 11.9 GB Report
EGAF00005093085 fq.gz 13.9 GB Report
EGAF00005093086 fq.gz 12.4 GB Report
EGAF00005093087 fq.gz 14.7 GB Report
EGAF00005093088 fq.gz 10.8 GB Report
EGAF00005093089 fq.gz 12.5 GB Report
EGAF00005093090 fq.gz 10.4 GB Report
EGAF00005093091 fq.gz 12.0 GB Report
EGAF00005093092 fq.gz 14.6 GB Report
EGAF00005093093 fq.gz 16.1 GB Report
EGAF00005093094 fq.gz 14.5 GB Report
EGAF00005093095 fq.gz 16.1 GB Report
EGAF00005093096 fq.gz 14.3 GB Report
EGAF00005093097 fq.gz 16.5 GB Report
EGAF00005093098 fq.gz 14.0 GB Report
EGAF00005093099 fq.gz 16.3 GB Report
EGAF00005093100 fq.gz 10.4 GB Report
EGAF00005093101 fq.gz 12.3 GB Report
EGAF00005093102 fq.gz 8.8 GB Report
EGAF00005093103 fq.gz 8.8 GB Report
EGAF00005093104 fq.gz 9.0 GB Report
EGAF00005093105 fq.gz 10.3 GB Report
EGAF00005093106 fq.gz 8.9 GB Report
EGAF00005093107 fq.gz 10.2 GB Report
EGAF00005093108 fq.gz 8.1 GB Report
EGAF00005093109 fq.gz 9.3 GB Report
EGAF00005093110 fq.gz 9.1 GB Report
EGAF00005093111 fq.gz 10.5 GB Report
EGAF00005093112 fq.gz 8.6 GB Report
EGAF00005093113 fq.gz 9.9 GB Report
EGAF00005093114 fq.gz 9.6 GB Report
EGAF00005093115 fq.gz 11.3 GB Report
EGAF00005093116 fq.gz 11.3 GB Report
EGAF00005093117 fq.gz 13.1 GB Report
EGAF00005093118 fq.gz 10.6 GB Report
EGAF00005093119 fq.gz 12.1 GB Report
EGAF00005093120 fq.gz 17.1 GB Report
EGAF00005093121 fq.gz 19.6 GB Report
EGAF00005093122 fq.gz 17.0 GB Report
EGAF00005093123 fq.gz 19.8 GB Report
EGAF00005093124 fq.gz 16.3 GB Report
EGAF00005093125 fq.gz 18.0 GB Report
EGAF00005093126 fq.gz 16.9 GB Report
EGAF00005093127 fq.gz 19.6 GB Report
EGAF00005093128 fq.gz 16.3 GB Report
EGAF00005093129 fq.gz 18.9 GB Report
EGAF00005093130 fq.gz 16.5 GB Report
EGAF00005093131 fq.gz 18.0 GB Report
EGAF00005093132 fq.gz 14.9 GB Report
EGAF00005093133 fq.gz 15.9 GB Report
EGAF00005093134 fq.gz 15.3 GB Report
EGAF00005093135 fq.gz 16.4 GB Report
EGAF00005093136 fq.gz 16.7 GB Report
EGAF00005093137 fq.gz 18.1 GB Report
EGAF00005093138 fq.gz 16.3 GB Report
EGAF00005093139 fq.gz 17.7 GB Report
EGAF00005093140 fq.gz 15.4 GB Report
EGAF00005093141 fq.gz 17.3 GB Report
EGAF00005093142 fq.gz 15.4 GB Report
EGAF00005093143 fq.gz 17.2 GB Report
EGAF00005093144 fq.gz 13.9 GB Report
EGAF00005093145 fq.gz 15.9 GB Report
EGAF00005093146 fq.gz 14.0 GB Report
EGAF00005093147 fq.gz 15.9 GB Report
EGAF00005093148 fq.gz 16.8 GB Report
EGAF00005093149 fq.gz 16.8 GB Report
EGAF00005093150 fq.gz 16.6 GB Report
EGAF00005093151 fq.gz 16.6 GB Report
EGAF00005093152 fq.gz 16.8 GB Report
EGAF00005093153 fq.gz 18.8 GB Report
EGAF00005093154 fq.gz 16.9 GB Report
EGAF00005093155 fq.gz 19.3 GB Report
EGAF00005093156 fq.gz 10.8 GB Report
EGAF00005093157 fq.gz 12.4 GB Report
EGAF00005093158 fq.gz 11.4 GB Report
EGAF00005093159 fq.gz 13.1 GB Report
EGAF00005093160 fq.gz 11.0 GB Report
EGAF00005093161 fq.gz 12.6 GB Report
EGAF00005093162 fq.gz 11.6 GB Report
EGAF00005093163 fq.gz 13.2 GB Report
EGAF00005093164 fq.gz 14.9 GB Report
EGAF00005093165 fq.gz 16.2 GB Report
EGAF00005093166 fq.gz 16.6 GB Report
EGAF00005093167 fq.gz 18.9 GB Report
EGAF00005093168 fq.gz 18.3 GB Report
EGAF00005093169 fq.gz 19.8 GB Report
EGAF00005093170 fq.gz 14.1 GB Report
EGAF00005093171 fq.gz 16.0 GB Report
EGAF00005093172 fq.gz 14.1 GB Report
EGAF00005093173 fq.gz 16.1 GB Report
EGAF00005093174 fq.gz 16.9 GB Report
EGAF00005093175 fq.gz 18.8 GB Report
EGAF00005093176 fq.gz 17.1 GB Report
EGAF00005093177 fq.gz 18.9 GB Report
EGAF00005093178 fq.gz 14.9 GB Report
EGAF00005093179 fq.gz 16.7 GB Report
EGAF00005093180 fq.gz 14.8 GB Report
EGAF00005093181 fq.gz 16.4 GB Report
EGAF00005093182 fq.gz 15.0 GB Report
EGAF00005093183 fq.gz 17.5 GB Report
EGAF00005093184 fq.gz 15.0 GB Report
EGAF00005093185 fq.gz 17.4 GB Report
EGAF00005093186 fq.gz 17.2 GB Report
EGAF00005093187 fq.gz 19.5 GB Report
EGAF00005093188 fq.gz 17.1 GB Report
EGAF00005093189 fq.gz 19.5 GB Report
EGAF00005093190 fq.gz 15.6 GB Report
EGAF00005093191 fq.gz 17.0 GB Report
EGAF00005093192 fq.gz 15.3 GB Report
EGAF00005093193 fq.gz 17.6 GB Report
EGAF00005093194 fq.gz 16.3 GB Report
EGAF00005093195 fq.gz 18.2 GB Report
EGAF00005093196 fq.gz 15.5 GB Report
EGAF00005093197 fq.gz 17.0 GB Report
EGAF00005093198 fq.gz 15.5 GB Report
EGAF00005093199 fq.gz 17.1 GB Report
EGAF00005093200 fq.gz 15.4 GB Report
EGAF00005093201 fq.gz 17.3 GB Report
EGAF00005093202 fq.gz 15.2 GB Report
EGAF00005093203 fq.gz 17.4 GB Report
EGAF00005093204 fq.gz 15.2 GB Report
EGAF00005093205 fq.gz 17.6 GB Report
EGAF00005093206 fq.gz 8.4 GB Report
EGAF00005093207 fq.gz 9.0 GB Report
EGAF00005093208 fq.gz 15.0 GB Report
EGAF00005093209 fq.gz 17.0 GB Report
EGAF00005093210 fq.gz 15.1 GB Report
EGAF00005093211 fq.gz 16.1 GB Report
EGAF00005093212 fq.gz 17.7 GB Report
EGAF00005093213 fq.gz 19.5 GB Report
EGAF00005093214 fq.gz 17.0 GB Report
EGAF00005093215 fq.gz 19.2 GB Report
EGAF00005093216 fq.gz 12.2 GB Report
EGAF00005093217 fq.gz 13.7 GB Report
EGAF00005093218 fq.gz 12.2 GB Report
EGAF00005093219 fq.gz 13.8 GB Report
EGAF00005093220 fq.gz 14.9 GB Report
EGAF00005093221 fq.gz 16.3 GB Report
EGAF00005093222 fq.gz 15.3 GB Report
EGAF00005093223 fq.gz 16.8 GB Report
EGAF00005093224 fq.gz 10.5 GB Report
EGAF00005093225 fq.gz 11.9 GB Report
EGAF00005093226 fq.gz 9.6 GB Report
EGAF00005093227 fq.gz 10.7 GB Report
EGAF00005093228 fq.gz 13.9 GB Report
EGAF00005093229 fq.gz 14.9 GB Report
EGAF00005093230 fq.gz 15.7 GB Report
EGAF00005093231 fq.gz 18.0 GB Report
EGAF00005093232 fq.gz 15.2 GB Report
EGAF00005093233 fq.gz 17.2 GB Report
EGAF00005093234 fq.gz 13.6 GB Report
EGAF00005093235 fq.gz 15.0 GB Report
EGAF00005093236 fq.gz 13.6 GB Report
EGAF00005093237 fq.gz 15.2 GB Report
EGAF00005093238 fq.gz 17.0 GB Report
EGAF00005093239 fq.gz 19.6 GB Report
EGAF00005093240 fq.gz 16.7 GB Report
EGAF00005093241 fq.gz 19.3 GB Report
EGAF00005093242 fq.gz 16.7 GB Report
EGAF00005093243 fq.gz 19.4 GB Report
EGAF00005093244 fq.gz 17.0 GB Report
EGAF00005093245 fq.gz 19.9 GB Report
EGAF00005093246 fq.gz 13.9 GB Report
EGAF00005093247 fq.gz 15.6 GB Report
EGAF00005093248 fq.gz 13.8 GB Report
EGAF00005093249 fq.gz 15.6 GB Report
EGAF00005093250 fq.gz 15.6 GB Report
EGAF00005093251 fq.gz 17.1 GB Report
EGAF00005093252 fq.gz 16.0 GB Report
EGAF00005093253 fq.gz 17.5 GB Report
EGAF00005093254 fq.gz 15.8 GB Report
EGAF00005093255 fq.gz 16.8 GB Report
EGAF00005093256 fq.gz 15.9 GB Report
EGAF00005093257 fq.gz 17.0 GB Report
EGAF00005093258 fq.gz 17.1 GB Report
EGAF00005093259 fq.gz 20.0 GB Report
EGAF00005093260 fq.gz 16.9 GB Report
EGAF00005093261 fq.gz 19.7 GB Report
EGAF00005093262 fq.gz 15.1 GB Report
EGAF00005093263 fq.gz 17.1 GB Report
EGAF00005093264 fq.gz 15.0 GB Report
EGAF00005093265 fq.gz 17.0 GB Report
EGAF00005093266 fq.gz 16.9 GB Report
EGAF00005093267 fq.gz 19.0 GB Report
EGAF00005093268 fq.gz 16.9 GB Report
EGAF00005093269 fq.gz 19.0 GB Report
EGAF00005093270 fq.gz 16.8 GB Report
EGAF00005093271 fq.gz 19.0 GB Report
EGAF00005093272 fq.gz 16.8 GB Report
EGAF00005093273 fq.gz 19.4 GB Report
EGAF00005093274 fq.gz 17.2 GB Report
EGAF00005093275 fq.gz 19.4 GB Report
EGAF00005093276 fq.gz 17.6 GB Report
EGAF00005093277 fq.gz 20.0 GB Report
EGAF00005093278 fq.gz 16.0 GB Report
EGAF00005093279 fq.gz 18.4 GB Report
EGAF00005093280 fq.gz 16.1 GB Report
EGAF00005093281 fq.gz 18.5 GB Report
EGAF00005093282 fq.gz 15.1 GB Report
EGAF00005093283 fq.gz 16.9 GB Report
EGAF00005093284 fq.gz 15.7 GB Report
EGAF00005093285 fq.gz 17.7 GB Report
EGAF00005093286 fq.gz 14.3 GB Report
EGAF00005093287 fq.gz 15.4 GB Report
EGAF00005093288 fq.gz 16.2 GB Report
EGAF00005093289 fq.gz 17.9 GB Report
EGAF00005093290 fq.gz 16.2 GB Report
EGAF00005093291 fq.gz 17.6 GB Report
EGAF00005093292 fq.gz 14.4 GB Report
EGAF00005093293 fq.gz 15.5 GB Report
EGAF00005093294 fq.gz 15.6 GB Report
EGAF00005093295 fq.gz 17.7 GB Report
EGAF00005093296 fq.gz 5.5 GB Report
EGAF00005093297 fq.gz 6.3 GB Report
EGAF00005093298 fq.gz 7.1 GB Report
EGAF00005093299 fq.gz 7.9 GB Report
EGAF00005093300 fq.gz 30.1 GB Report
EGAF00005093301 fq.gz 34.8 GB Report
EGAF00005093302 fq.gz 2.5 GB Report
EGAF00005093303 fq.gz 2.9 GB Report
EGAF00005093304 fq.gz 2.4 GB Report
EGAF00005093305 fq.gz 2.8 GB Report
EGAF00005093306 fq.gz 2.4 GB Report
EGAF00005093307 fq.gz 2.8 GB Report
EGAF00005093308 fq.gz 2.4 GB Report
EGAF00005093309 fq.gz 2.7 GB Report
EGAF00005093310 fq.gz 15.9 GB Report
EGAF00005093311 fq.gz 16.9 GB Report
EGAF00005093312 fq.gz 15.9 GB Report
EGAF00005093313 fq.gz 16.9 GB Report
EGAF00005093314 fq.gz 15.9 GB Report
EGAF00005093315 fq.gz 16.6 GB Report
EGAF00005093316 fq.gz 15.7 GB Report
EGAF00005093317 fq.gz 16.4 GB Report
EGAF00005096571 fq.gz 16.3 GB Report
EGAF00005096572 fq.gz 19.0 GB Report
EGAF00005096573 fq.gz 16.4 GB Report
EGAF00005096574 fq.gz 17.7 GB Report
EGAF00005096575 fq.gz 16.0 GB Report
EGAF00005096576 fq.gz 18.7 GB Report
EGAF00005096577 fq.gz 16.6 GB Report
EGAF00005096578 fq.gz 18.1 GB Report
EGAF00005096579 fq.gz 14.7 GB Report
EGAF00005096580 fq.gz 16.4 GB Report
EGAF00005096581 fq.gz 14.8 GB Report
EGAF00005096582 fq.gz 16.5 GB Report
EGAF00005096583 fq.gz 14.8 GB Report
EGAF00005096584 fq.gz 16.4 GB Report
EGAF00005096585 fq.gz 14.8 GB Report
EGAF00005096586 fq.gz 16.6 GB Report
EGAF00005096587 fq.gz 15.0 GB Report
EGAF00005096588 fq.gz 17.1 GB Report
EGAF00005096589 fq.gz 15.0 GB Report
EGAF00005096590 fq.gz 17.0 GB Report
EGAF00005096591 fq.gz 15.0 GB Report
EGAF00005096592 fq.gz 16.9 GB Report
EGAF00005096593 fq.gz 14.9 GB Report
EGAF00005096594 fq.gz 16.9 GB Report
EGAF00005096595 fq.gz 15.2 GB Report
EGAF00005096596 fq.gz 17.4 GB Report
EGAF00005096597 fq.gz 15.1 GB Report
EGAF00005096598 fq.gz 17.3 GB Report
EGAF00005096599 fq.gz 15.0 GB Report
EGAF00005096600 fq.gz 17.3 GB Report
EGAF00005096601 fq.gz 15.0 GB Report
EGAF00005096602 fq.gz 17.1 GB Report
EGAF00005096603 fq.gz 16.5 GB Report
EGAF00005096604 fq.gz 18.6 GB Report
EGAF00005096605 fq.gz 16.5 GB Report
EGAF00005096606 fq.gz 18.6 GB Report
EGAF00005096607 fq.gz 16.5 GB Report
EGAF00005096608 fq.gz 18.6 GB Report
EGAF00005096609 fq.gz 16.4 GB Report
EGAF00005096610 fq.gz 18.5 GB Report
EGAF00005096611 fq.gz 6.5 GB
EGAF00005096612 fq.gz 6.4 GB
EGAF00005096613 fq.gz 9.7 GB
EGAF00005096614 fq.gz 9.9 GB
EGAF00005096615 fq.gz 8.6 GB
EGAF00005096616 fq.gz 8.7 GB
EGAF00005096617 fq.gz 8.0 GB
EGAF00005096618 fq.gz 8.2 GB
EGAF00005096619 fq.gz 1.6 GB
EGAF00005096620 fq.gz 1.6 GB
EGAF00005096621 fq.gz 5.1 GB
EGAF00005096622 fq.gz 5.2 GB
EGAF00005096623 fq.gz 3.8 GB
EGAF00005096624 fq.gz 3.8 GB
EGAF00005096625 fq.gz 13.4 GB
EGAF00005096626 fq.gz 13.6 GB
EGAF00005096627 fq.gz 13.1 GB
EGAF00005096628 fq.gz 13.4 GB
304 Files (4.5 TB)