About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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GELATO clinical trial whole exome sequencing data (primary tumors and local recurrences)

Paired-end whole exome sequencing of 10 lobular breast cancer primary tumors, 3 local recurrences and matched normal samples obtained from 10 unique patients from the GELATO clinical trial. The included raw sequencing data in fastq format was generated using Illumina NovaSeq 6000 from archived FFPE material (tumor data) and fresh frozen material (matched normal data).

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DUO:0000001
version: 2021-02-23

data use permission

A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.

Data Access Committee of the Kok group, NKI.

To request access to the datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to KT&C and the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006902 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007846414 fastq.gz 5.3 GB Report
EGAF00007846415 fastq.gz 5.4 GB Report
EGAF00007846420 fastq.gz 4.9 GB Report
EGAF00007846421 fastq.gz 5.0 GB Report
EGAF00007846424 fastq.gz 5.2 GB Report
EGAF00007846425 fastq.gz 5.4 GB Report
EGAF00007846428 fastq.gz 5.2 GB Report
EGAF00007846429 fastq.gz 5.3 GB Report
EGAF00007846430 fastq.gz 4.8 GB Report
EGAF00007846431 fastq.gz 4.9 GB Report
EGAF00007846434 fastq.gz 5.2 GB Report
EGAF00007846435 fastq.gz 5.3 GB Report
EGAF00007846440 fastq.gz 3.7 GB Report
EGAF00007846441 fastq.gz 3.7 GB Report
EGAF00007846444 fastq.gz 4.2 GB Report
EGAF00007846445 fastq.gz 4.2 GB Report
EGAF00007846446 fastq.gz 4.2 GB Report
EGAF00007846447 fastq.gz 4.2 GB Report
EGAF00007846450 fastq.gz 2.7 GB Report
EGAF00007846451 fastq.gz 2.7 GB Report
EGAF00007846558 fastq.gz 3.2 GB Report
EGAF00007846559 fastq.gz 3.3 GB Report
EGAF00007846560 fastq.gz 3.3 GB Report
EGAF00007846561 fastq.gz 3.5 GB Report
EGAF00007846562 fastq.gz 3.9 GB Report
EGAF00007846563 fastq.gz 4.1 GB Report
EGAF00007846564 fastq.gz 2.5 GB Report
EGAF00007846565 fastq.gz 2.6 GB Report
EGAF00007846566 fastq.gz 5.5 GB Report
EGAF00007846567 fastq.gz 5.8 GB Report
EGAF00007846568 fastq.gz 2.2 GB Report
EGAF00007846569 fastq.gz 2.2 GB Report
EGAF00007846570 fastq.gz 4.7 GB Report
EGAF00007846571 fastq.gz 4.8 GB Report
EGAF00007846572 fastq.gz 2.3 GB Report
EGAF00007846573 fastq.gz 2.3 GB Report
EGAF00007846574 fastq.gz 6.8 GB Report
EGAF00007846575 fastq.gz 7.1 GB Report
EGAF00007846576 fastq.gz 4.1 GB Report
EGAF00007846577 fastq.gz 4.2 GB Report
EGAF00007846578 fastq.gz 4.4 GB Report
EGAF00007846579 fastq.gz 4.5 GB Report
EGAF00007846580 fastq.gz 3.9 GB Report
EGAF00007846581 fastq.gz 4.0 GB Report
EGAF00007846582 fastq.gz 4.3 GB Report
EGAF00007846583 fastq.gz 4.5 GB Report
46 Files (195.8 GB)