CCA Visium spatial transcriptomics data (4 CCA)
Visium spatial transcriptomics (10X Genomics) performed on 4 CCA samples. Each sample has two paired-end sequencing runs: the first (I1 & I2) are a pair reading indexes; the second (R1 & R2) are a pair reading inserts, with R1 additionally reading 10X barcodes. For histology images, please contact authors.
- 4 samples
- DAC: EGAC00001003452
- Technology: Illumina NovaSeq 6000
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- COL DUO:0000020 (version: 2021-02-23)collaboration requiredThis data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).
- IRB DUO:0000021 (version: 2021-02-23)ethics approval requiredThis data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- NPOA DUO:0000044 (version: 2021-02-23)population origins or ancestry research prohibitedThis data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.
- NPU DUO:0000045 (version: 2021-02-23)not for profit organisation use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations.
- NCU DUO:0000046 (version: 2021-02-23)non-commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit use.
Enhancer studies on CCA
DUO:0000006 health/medical/biomedical research and clinical care This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry. DUO:0000020 collaboration required This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s). DUO:0000021 ethics approval required This requirement indicates that the requestor must provide documentation of local IRB/ERB approval. DUO:0000018 not-for-profit use only This requirement indicates that use is limited to not-for-profit organizations. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited. DUO:0000045 not for profit organisation use only This data use modifier indicates that use of the data is limited to not-for-profit organizations. DUO:0000046 non-commercial use only This data use modifier indicates that use of the data is limited to not-for-profit use. DUO:0000027 project-specific restriction This requirement indicates that use is limited to use within an approved project. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007309 | Epigenetics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008264002 | fastq.gz | 997.5 MB | ||
| EGAF00008264003 | fastq.gz | 1.2 GB | ||
| EGAF00008264004 | fastq.gz | 2.9 GB | ||
| EGAF00008264005 | fastq.gz | 7.8 GB | ||
| EGAF00008264006 | fastq.gz | 390.5 MB | ||
| EGAF00008264007 | fastq.gz | 442.7 MB | ||
| EGAF00008264008 | fastq.gz | 1.1 GB | ||
| EGAF00008264009 | fastq.gz | 2.7 GB | ||
| EGAF00008264010 | fastq.gz | 996.8 MB | ||
| EGAF00008264011 | fastq.gz | 1.2 GB | ||
| EGAF00008264012 | fastq.gz | 3.4 GB | ||
| EGAF00008264013 | fastq.gz | 8.9 GB | ||
| EGAF00008264014 | fastq.gz | 901.1 MB | ||
| EGAF00008264015 | fastq.gz | 1.0 GB | ||
| EGAF00008264016 | fastq.gz | 2.6 GB | ||
| EGAF00008264017 | fastq.gz | 7.1 GB | ||
| 16 Files (43.6 GB) | ||||