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Acral Melanoma PDXs from the admixed Brazilian Population - filtered PDX sample BAM files - Whole exome sequencing data

BAM files containing the whole exome data for the Patient Derived Xenograft samples mapped to build GRCh38. All files have been processed with XenofilteR to remove mouse reads. Acral melanoma (AM) is an aggressive melanoma subtype with limited therapeutic options and poor outcomes. In non-European descent and admixed populations, like in Latin America, it can account for a significant proportion of cutaneous melanoma cases. Here, we performed comprehensive genomic and functional profiling of AM from a uniquely diverse Brazilian cohort. Whole-exome and transcriptome sequencing was performed on both tumours and patient-derived xenograft (PDX) samples. The PDX were obtained from a comprehensive collection of patient-derived xenograft (AM-PDX) models that we established which faithfully retained the histopathological and genomic features of the original tumours.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008231 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008943512 bam 7.4 GB
EGAF00008943513 bam 6.7 GB
EGAF00008943514 bam 7.9 GB
EGAF00008943515 bam 8.1 GB
EGAF00008943516 bam 6.7 GB
EGAF00008943517 bam 10.0 GB
EGAF00008943518 bam 7.1 GB
EGAF00008943519 bam 8.4 GB
EGAF00008943520 bam 6.4 GB
EGAF00008943521 bam 6.0 GB
EGAF00008943522 bam 8.2 GB
EGAF00008943523 bam 10.1 GB
EGAF00008943524 bam 8.3 GB
EGAF00008943525 bam 8.6 GB
EGAF00008943526 bam 7.2 GB
EGAF00008943527 bam 9.4 GB
EGAF00008943528 bam 11.0 GB
EGAF00008943529 bam 9.3 GB
EGAF00008943530 bam 6.5 GB
EGAF00008943531 bam 7.8 GB
EGAF00008943532 bam 6.0 GB
EGAF00008943533 bam 8.5 GB
EGAF00008943534 bam 4.2 GB
EGAF00008943535 bam 6.5 GB
EGAF00008943536 bam 6.3 GB
EGAF00008943537 bam 7.9 GB
EGAF00008943538 bam 8.2 GB
EGAF00008943539 bam 7.2 GB
EGAF00008943540 bam 8.8 GB
EGAF00008943541 bam 7.4 GB
EGAF00008943542 bam 7.7 GB
EGAF00008943543 bam 7.6 GB
EGAF00008943544 bam 4.5 GB
EGAF00008943545 bam 7.5 GB
EGAF00008943546 bam 7.1 GB
EGAF00008943547 bam 6.9 GB
36 Files (273.2 GB)