About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WHOLE GENOME SEQUENCING FOR THE CHARACTERIZATION OF CLEAR CELL RENAL CELL CARCINOMA IN VHL PATIENT

To characterize clear cell Renal Cell Carcinoma (ccRCC), we set up a comprehensive multi-omics pilot study on a VHL-ccRCC-patient. Whole Genome Sequencing (WGS) was applied on six ccRCCs, four cysts and one blood DNA sample as germinal control. Raw-data were analyzed with GENomics-DRAGEN platform. We will upload WGS-Data for 11 samples (6 ccRCCs, 4 Cysts, 1 blood).

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000024
version: 2021-02-23

publication moratorium

This data use modifier indicates that requestor agrees not to publish results of studies until a specific date.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

OSR Policy

OSPEDALE SAN RAFFAELE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000295 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000099280 bai 9.4 MB
EGAF50000099281 bam 81.0 GB
EGAF50000099282 bai 10.2 MB
EGAF50000099283 bam 151.4 GB
EGAF50000099284 bam 69.1 GB
EGAF50000099285 bai 9.4 MB
EGAF50000099286 bai 10.1 MB
EGAF50000099287 bam 139.8 GB
EGAF50000099288 bai 10.0 MB
EGAF50000099289 bam 13.0 GB
EGAF50000099290 bai 10.7 MB
EGAF50000099291 bam 28.8 GB
EGAF50000099292 bam 102.9 GB
EGAF50000099293 bai 9.7 MB
EGAF50000099294 bam 23.5 GB
EGAF50000099295 bai 10.2 MB
EGAF50000099296 bam 62.2 GB
EGAF50000099297 bai 9.4 MB
EGAF50000099298 bai 10.1 MB
EGAF50000099299 bam 133.0 GB
EGAF50000099300 bam 8.9 GB
EGAF50000099301 bai 10.1 MB
22 Files (813.6 GB)