Whole genome sequencing data of high-grade serous ovarian cancer samples (set 12)
The dataset contains whole genome sequencing data of 17 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 46 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.
- 30/04/2024
- 46 samples
- DAC: EGAC00001001760
- Technology: Illumina NovaSeq 6000
- DS DUO:0000007 (version: 2019-01-07)disease specific researchThis data use permission indicates that use is allowed provided it is related to the specified disease.ModifiersMONDO:0004992
- US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
- PS DUO:0000027 (version: 2019-01-07)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- IS DUO:0000028 (version: 2019-01-07)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE).
The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE). See link for full description
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006775 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008406725 | fq.gz | 42.5 GB | ||
| EGAF00008406726 | fq.gz | 43.4 GB | ||
| EGAF00008406833 | fq.gz | 41.2 GB | ||
| EGAF00008406835 | fq.gz | 42.7 GB | ||
| EGAF00008406845 | fq.gz | 1.9 GB | ||
| EGAF00008406847 | fq.gz | 1.9 GB | ||
| EGAF00008406848 | fq.gz | 320.2 MB | ||
| EGAF00008406850 | fq.gz | 332.5 MB | ||
| EGAF00008406852 | fq.gz | 37.6 GB | ||
| EGAF00008406854 | fq.gz | 38.8 GB | ||
| EGAF00008406881 | fq.gz | 40.1 GB | ||
| EGAF00008406884 | fq.gz | 41.6 GB | ||
| EGAF00008406913 | fq.gz | 45.9 GB | ||
| EGAF00008406915 | fq.gz | 46.3 GB | ||
| EGAF00008406924 | fq.gz | 7.9 GB | ||
| EGAF00008406928 | fq.gz | 71.0 MB | ||
| EGAF00008406929 | fq.gz | 32.4 GB | ||
| EGAF00008406930 | fq.gz | 33.0 GB | ||
| EGAF00008406948 | fq.gz | 71.5 MB | ||
| EGAF00008406956 | fq.gz | 8.0 GB | ||
| EGAF00008406963 | fq.gz | 41.1 GB | ||
| EGAF00008406967 | fq.gz | 42.3 GB | ||
| EGAF00008406981 | fq.gz | 48.0 GB | ||
| EGAF00008406983 | fq.gz | 50.5 GB | ||
| EGAF00008406997 | fq.gz | 1.7 GB | ||
| EGAF00008406999 | fq.gz | 1.7 GB | ||
| EGAF00008407003 | fq.gz | 43.1 GB | ||
| EGAF00008407005 | fq.gz | 44.7 GB | ||
| EGAF00008407006 | fq.gz | 38.4 GB | ||
| EGAF00008407007 | fq.gz | 40.4 GB | ||
| EGAF00008407008 | fq.gz | 532.1 MB | ||
| EGAF00008407009 | fq.gz | 557.9 MB | ||
| EGAF00008407010 | fq.gz | 47.7 GB | ||
| EGAF00008407011 | fq.gz | 49.4 GB | ||
| EGAF00008407214 | fq.gz | 39.4 GB | ||
| EGAF00008407219 | fq.gz | 41.4 GB | ||
| EGAF00008407827 | fq.gz | 47.1 GB | ||
| EGAF00008408344 | fq.gz | 41.6 GB | ||
| EGAF00008408384 | fq.gz | 63.0 GB | ||
| EGAF00008408458 | fq.gz | 45.0 GB | ||
| EGAF00008408462 | fq.gz | 46.7 GB | ||
| EGAF00008408513 | fq.gz | 53.8 GB | ||
| EGAF00008408541 | fq.gz | 40.2 GB | ||
| EGAF00008408636 | fq.gz | 43.0 GB | ||
| EGAF00008408722 | fq.gz | 45.0 GB | ||
| EGAF00008408756 | fq.gz | 1.0 GB | ||
| EGAF00008408817 | fq.gz | 36.0 GB | ||
| EGAF00008408989 | fq.gz | 37.6 GB | ||
| EGAF00008409090 | fq.gz | 50.6 GB | ||
| EGAF00008409385 | fq.gz | 44.1 GB | ||
| EGAF00008409397 | fq.gz | 45.3 GB | ||
| EGAF00008409469 | fq.gz | 46.6 GB | ||
| EGAF00008409578 | fq.gz | 46.2 GB | ||
| EGAF00008409583 | fq.gz | 1.1 GB | ||
| EGAF00008409902 | fq.gz | 61.6 GB | ||
| EGAF00008409969 | fq.gz | 4.8 GB | ||
| EGAF00008410020 | fq.gz | 39.7 GB | ||
| EGAF00008410021 | fq.gz | 508.3 MB | ||
| EGAF00008410032 | fq.gz | 44.2 GB | ||
| EGAF00008410047 | fq.gz | 36.0 GB | ||
| EGAF00008410155 | fq.gz | 50.0 GB | ||
| EGAF00008410167 | fq.gz | 41.4 GB | ||
| EGAF00008410173 | fq.gz | 56.4 GB | ||
| EGAF00008410247 | fq.gz | 50.8 GB | ||
| EGAF00008410253 | fq.gz | 41.5 GB | ||
| EGAF00008410339 | fq.gz | 40.9 GB | ||
| EGAF00008410454 | fq.gz | 36.7 GB | ||
| EGAF00008410479 | fq.gz | 51.4 GB | ||
| EGAF00008410644 | fq.gz | 45.2 GB | ||
| EGAF00008410788 | fq.gz | 43.7 GB | ||
| EGAF00008410823 | fq.gz | 43.2 GB | ||
| EGAF00008410877 | fq.gz | 48.4 GB | ||
| EGAF00008410902 | fq.gz | 43.2 GB | ||
| EGAF00008411038 | fq.gz | 54.3 GB | ||
| EGAF00008411106 | fq.gz | 46.8 GB | ||
| EGAF00008411136 | fq.gz | 44.3 GB | ||
| EGAF00008411202 | fq.gz | 58.0 GB | ||
| EGAF00008411251 | fq.gz | 43.3 GB | ||
| EGAF00008411279 | fq.gz | 44.2 GB | ||
| EGAF00008411306 | fq.gz | 35.8 GB | ||
| EGAF00008411334 | fq.gz | 52.4 GB | ||
| EGAF00008411335 | fq.gz | 45.1 GB | ||
| EGAF00008411364 | fq.gz | 4.6 GB | ||
| EGAF00008411382 | fq.gz | 49.2 GB | ||
| EGAF00008411402 | fq.gz | 48.8 GB | ||
| EGAF00008411455 | fq.gz | 44.6 GB | ||
| EGAF00008411476 | fq.gz | 46.8 GB | ||
| EGAF00008411481 | fq.gz | 52.8 GB | ||
| EGAF00008411482 | fq.gz | 535.7 MB | ||
| EGAF00008411491 | fq.gz | 33.5 GB | ||
| EGAF00008411558 | fq.gz | 45.2 GB | ||
| EGAF00008411561 | fq.gz | 45.3 GB | ||
| EGAF00008411616 | fq.gz | 48.0 GB | ||
| EGAF00008411655 | fq.gz | 46.2 GB | ||
| EGAF00008411716 | fq.gz | 50.7 GB | ||
| EGAF00008411757 | fq.gz | 52.9 GB | ||
| EGAF00008423306 | fq.gz | 5.3 GB | ||
| EGAF00008423307 | fq.gz | 5.5 GB | ||
| EGAF00008423308 | fq.gz | 40.8 GB | ||
| EGAF00008423309 | fq.gz | 42.8 GB | ||
| EGAF00008423310 | fq.gz | 617.7 MB | ||
| EGAF00008423311 | fq.gz | 658.3 MB | ||
| EGAF00008423312 | fq.gz | 3.6 GB | ||
| EGAF00008423313 | fq.gz | 3.7 GB | ||
| EGAF00008423314 | fq.gz | 34.0 GB | ||
| EGAF00008423315 | fq.gz | 35.1 GB | ||
| EGAF00008423917 | fq.gz | 7.0 GB | ||
| EGAF00008423918 | fq.gz | 7.4 GB | ||
| EGAF00008423924 | fq.gz | 42.7 GB | ||
| EGAF00008423935 | fq.gz | 51.7 GB | ||
| EGAF00008423937 | fq.gz | 49.8 GB | ||
| EGAF00008423939 | fq.gz | 40.2 GB | ||
| EGAF00008423941 | fq.gz | 49.3 GB | ||
| EGAF00008423942 | fq.gz | 52.1 GB | ||
| EGAF00008423943 | fq.gz | 47.1 GB | ||
| EGAF00008423944 | fq.gz | 49.0 GB | ||
| EGAF00008424710 | fq.gz | 42.7 GB | ||
| EGAF00008424711 | fq.gz | 44.7 GB | ||
| 118 Files (4.2 TB) | ||||