About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Small-RNA sequencing of pheochromocytoma and paraganglioma arising from germline SDHB mutations

Single-end 75 basepair small-RNA sequencing of 90 SDHB-deficient non-metastatic and metastatic pheochromocytoma and paraganglioma. Samples were prepared using the NEXTFLEX® Small RNA-Seq Kit v3 (Bioo Scientific ). Samples were sequenced at the molecular genomics core (Peter MacCallum Cancer Centre) using 50bp single end sequencing on the Illumina NextSeq 500 (Illumina, USA). This dataset contains raw sequencing reads in FASTQ format.

Request Access

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form Email the completed form to: UMCCR-DAC@unimelb.edu.au The following form is to be used to submit an expression of interest to access data under the purview of the UMCCR-DAC and does not represent a binding data access agreement. REQUESTOR INFORMATION Graduate research student requestors must include their supervisor or a senior researcher as the Principal Investigator. Please use institutional email addresses only. Requestor Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Principal Investigator (if different to the Requestor) Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Authorised Institutional Representative Name: Job Title/Position: Institution: Telephone: Email: Postal Address: DATA REQUESTED Data description Include the EGA study and dataset accession number(s), other data identifier(s) and/or the name of the publication describing the data. Data type Is the requested data identifiable? (Whole-genome sequencing data is not considered identifiable.) ☐ Yes ☐ No PROJECT DETAILS Project description Describe the project in which the data will be used (500 words maximum). This should include specific details of the aims and what you plan to do with the data. Members of the project team requiring access to the data. Include the following information: Name Job title/position Institution Email Supervisor Feasibility Describe previous experience in this field of research and/or in similar projects by the requestor, principal investigator and other members of the project team. ETHICS APPROVAL Does this project require approval from a Human Research Ethics Committee (HREC) or comparable committee? ☐ Yes ☐ No If yes, name the HREC from which approval has been requested or obtained and attach relevant documentation (ethics application and/or approval documentation). If no, please explain why ethics approval is not required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000346 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008431262 fastq.gz 310.0 MB Report
EGAF00008431264 fastq.gz 328.3 MB Report
EGAF00008431266 fastq.gz 361.7 MB Report
EGAF00008431268 fastq.gz 266.8 MB Report
EGAF00008431270 fastq.gz 295.9 MB Report
EGAF00008431272 fastq.gz 216.5 MB Report
EGAF00008431274 fastq.gz 390.5 MB Report
EGAF00008431275 fastq.gz 354.8 MB Report
EGAF00008431276 fastq.gz 290.1 MB Report
EGAF00008431277 fastq.gz 390.2 MB Report
EGAF00008431278 fastq.gz 334.4 MB Report
EGAF00008431279 fastq.gz 279.1 MB Report
EGAF00008431280 fastq.gz 206.4 MB Report
EGAF00008431281 fastq.gz 222.6 MB Report
EGAF00008431282 fastq.gz 228.9 MB Report
EGAF00008431283 fastq.gz 369.5 MB Report
EGAF00008431284 fastq.gz 210.2 MB Report
EGAF00008431285 fastq.gz 348.0 MB Report
EGAF00008431286 fastq.gz 294.6 MB Report
EGAF00008431287 fastq.gz 334.7 MB Report
EGAF00008431288 fastq.gz 344.2 MB Report
EGAF00008431289 fastq.gz 285.3 MB Report
EGAF00008431290 fastq.gz 287.6 MB Report
EGAF00008431291 fastq.gz 289.5 MB Report
EGAF00008431292 fastq.gz 297.3 MB Report
EGAF00008431293 fastq.gz 294.0 MB Report
EGAF00008431294 fastq.gz 362.7 MB Report
EGAF00008431295 fastq.gz 293.1 MB Report
EGAF00008431296 fastq.gz 271.4 MB Report
EGAF00008431298 fastq.gz 316.0 MB Report
EGAF00008431299 fastq.gz 237.6 MB Report
EGAF00008431302 fastq.gz 306.2 MB Report
EGAF00008431304 fastq.gz 326.4 MB Report
EGAF00008431305 fastq.gz 223.4 MB Report
EGAF00008431308 fastq.gz 342.8 MB Report
EGAF00008431310 fastq.gz 387.0 MB Report
EGAF00008431315 fastq.gz 400.0 MB Report
EGAF00008431317 fastq.gz 285.4 MB Report
EGAF00008431318 fastq.gz 289.2 MB Report
EGAF00008431320 fastq.gz 302.5 MB Report
EGAF00008431322 fastq.gz 380.7 MB Report
EGAF00008431324 fastq.gz 358.0 MB Report
EGAF00008431325 fastq.gz 271.4 MB Report
EGAF00008431326 fastq.gz 336.3 MB Report
EGAF00008431327 fastq.gz 213.2 MB Report
EGAF00008431330 fastq.gz 354.2 MB Report
EGAF00008431332 fastq.gz 277.2 MB Report
EGAF00008431333 fastq.gz 293.2 MB Report
EGAF00008431335 fastq.gz 381.8 MB Report
EGAF00008431336 fastq.gz 339.2 MB Report
EGAF00008431338 fastq.gz 283.7 MB Report
EGAF00008431342 fastq.gz 323.3 MB Report
EGAF00008431343 fastq.gz 288.1 MB Report
EGAF00008431345 fastq.gz 299.0 MB Report
EGAF00008431347 fastq.gz 319.3 MB Report
EGAF00008431349 fastq.gz 239.9 MB Report
EGAF00008431353 fastq.gz 316.3 MB Report
EGAF00008431355 fastq.gz 236.8 MB Report
EGAF00008431356 fastq.gz 276.4 MB Report
EGAF00008431359 fastq.gz 332.4 MB Report
EGAF00008431362 fastq.gz 369.8 MB Report
EGAF00008431364 fastq.gz 332.1 MB Report
EGAF00008431366 fastq.gz 498.4 MB Report
EGAF00008431367 fastq.gz 353.6 MB Report
EGAF00008431385 fastq.gz 321.9 MB Report
EGAF00008431386 fastq.gz 344.7 MB Report
EGAF00008431393 fastq.gz 324.1 MB Report
EGAF00008431395 fastq.gz 497.2 MB Report
EGAF00008431396 fastq.gz 355.0 MB Report
EGAF00008431399 fastq.gz 348.4 MB Report
EGAF00008431401 fastq.gz 226.1 MB Report
EGAF00008431403 fastq.gz 369.6 MB Report
EGAF00008431406 fastq.gz 392.1 MB Report
EGAF00008431408 fastq.gz 295.3 MB Report
EGAF00008431410 fastq.gz 149.1 MB Report
EGAF00008431412 fastq.gz 173.3 MB Report
EGAF00008431413 fastq.gz 315.7 MB Report
EGAF00008431415 fastq.gz 411.9 MB Report
EGAF00008431418 fastq.gz 237.6 MB Report
EGAF00008431434 fastq.gz 317.0 MB Report
EGAF00008431445 fastq.gz 286.2 MB Report
EGAF00008431449 fastq.gz 330.4 MB Report
EGAF00008431455 fastq.gz 290.3 MB Report
EGAF00008431456 fastq.gz 341.1 MB Report
EGAF00008431460 fastq.gz 311.4 MB Report
EGAF00008431498 fastq.gz 371.5 MB Report
EGAF00008431522 fastq.gz 344.6 MB Report
EGAF00008431524 fastq.gz 327.2 MB Report
EGAF00008431569 fastq.gz 381.2 MB Report
EGAF00008431589 fastq.gz 368.7 MB Report
90 Files (28.3 GB)