RNA sequencing of Ewing sarcoma and CIC-DUX4 sarcoma
RNA sequencing of a collection of 6 Ewing sarcoma and 3 CIC-DUX4 sarcoma tumoroids plus 3 matched patient tumors. Tumoroids were established from digested patient tumor material as 3D culture in Matrigel. After 2-3 month of growth, RNA was isolated from individual tumoroid models using the RNeasy Kit (Qiagen) and used for whole exome sequencing. RNA from corresponding patient tumors was tested in parallel, if available.
- 28/10/2024
- 11 samples
- DAC: EGAC50000000260
- Technology: Illumina NovaSeq 6000
DUO:0000042 version: 2021-02-23
general research use
This data use permission indicates that use is allowed for general research use for any research purpose.
Data University Children`s Hospital Zurich
No data use restrictions.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000380 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF50000125285 | fastq.gz | 6.6 GB | Report |
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| EGAF50000125286 | fastq.gz | 6.4 GB | Report |
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| EGAF50000125287 | fastq.gz | 4.3 GB | Report |
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| EGAF50000125288 | fastq.gz | 4.4 GB | Report |
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| EGAF50000125289 | fastq.gz | 4.1 GB | Report |
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| EGAF50000125290 | fastq.gz | 4.4 GB | Report |
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| EGAF50000125293 | fastq.gz | 5.5 GB | Report |
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| EGAF50000125294 | fastq.gz | 5.3 GB | Report |
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| EGAF50000125303 | fastq.gz | 6.9 GB | Report |
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| EGAF50000125304 | fastq.gz | 6.6 GB | Report |
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| EGAF50000125313 | fastq.gz | 4.3 GB | Report |
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| EGAF50000125314 | fastq.gz | 4.4 GB | Report |
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| EGAF50000125315 | fastq.gz | 6.1 GB | Report |
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| EGAF50000125316 | fastq.gz | 5.9 GB | Report |
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| EGAF50000125317 | fastq.gz | 4.3 GB | Report |
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| EGAF50000125318 | fastq.gz | 4.2 GB | Report |
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| EGAF50000125329 | fastq.gz | 5.4 GB | Report |
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| EGAF50000125330 | fastq.gz | 5.3 GB | Report |
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| EGAF50000125331 | fastq.gz | 5.3 GB | Report |
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| EGAF50000125332 | fastq.gz | 5.5 GB | Report |
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| EGAF50000125333 | fastq.gz | 4.3 GB | Report |
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| EGAF50000125334 | fastq.gz | 4.6 GB | Report |
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| 22 Files (114.1 GB) | ||||