About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-seq of Patient-derived tumor fragments (PDTFs)

scRNA-seq of Patient-derived tumor fragments (PDTFs) which were treated with either Isotype (DP47), Isotype-IL2v (DP47-IL2v), anti-PD1 (PembroPGLALA) or PD1-IL2v (PembroPGLALA-IL2v) for 48 hours. Dataset content: 10 samples from 3 donors File type: paired-end fastq files Protocol: Chromium Single Cell 3' Reagent Kits User Guide (Dual Index) with Feature Barcoding technology for Cell Surface Protein (CG000317) Technology: Illumina sequencing Experimentation: scRNA-seq using the 10X technology

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Data Access Policy of Datasets controlled by MF-DAC

ATTENTION: Please check the following policy and the documents/information to provide in order to get access to the requested datasets. You can find the governing policy on Zenodo under the link: https://zenodo.org/records/12517622 Please provide all information as requested in the document to the MF-DAC. Additionally, you can find more information about the Data Access Committee of the Medical Faculty of the University of Basel (MF-DAC) under the following link on Zenodo: https://zenodo.org/records/10137776

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000396 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000130651 3.3 GB
EGAF50000130652 4.1 GB
EGAF50000130653 5.6 GB
EGAF50000130654 6.8 GB
EGAF50000130655 4.3 GB
EGAF50000130656 5.1 GB
EGAF50000130657 2.6 GB
EGAF50000130658 3.2 GB
EGAF50000130659 2.1 GB
EGAF50000130660 2.6 GB
EGAF50000130661 1.4 GB
EGAF50000130662 1.8 GB
EGAF50000130663 2.3 GB
EGAF50000130664 2.9 GB
EGAF50000130665 2.6 GB
EGAF50000130666 3.3 GB
EGAF50000130667 6.2 GB
EGAF50000130668 7.3 GB
EGAF50000130669 2.6 GB
EGAF50000130670 3.3 GB
20 Files (73.4 GB)