About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Comparison clinical recommendation MASTER and panel sequencing: Genomic data

This dataset contains 29 case/control samples of WES and WGS sequencing data. Sequencing was performed on Illumina HiSeq X using TruSeq Stranded DNA Kit. The sequencing was always paired.

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DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002759 Other
EGAS00001004338 Cancer Genomics
EGAS00001004494 Other
EGAS00001005145 Cancer Genomics
EGAS00001005537 Other
EGAS50000000431 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001984731 bam 157.9 GB Report
EGAF00004167447 bam 138.9 GB Report
EGAF00004167448 bam 139.4 GB Report
EGAF00004196626 bam 10.7 GB Report
EGAF00004196774 bam 7.4 GB Report
EGAF00004196779 bam 5.9 GB Report
EGAF00004196793 bam 9.7 GB Report
EGAF00004197841 bam 9.7 GB Report
EGAF00004198003 bam 7.5 GB Report
EGAF00004454640 bam 132.7 GB Report
EGAF00004454734 bam 137.8 GB Report
EGAF00004454736 bam 142.4 GB Report
EGAF00004721716 bam 146.8 GB Report
EGAF00004725356 bam 150.0 GB Report
EGAF00004725359 bam 149.6 GB Report
EGAF00005466405 bam 154.1 GB Report
EGAF00005466426 bam 142.9 GB Report
EGAF00005686460 bam 6.0 GB Report
EGAF00005686518 bam 7.0 GB Report
EGAF00006165134 fastq.gz 3.4 GB Report
EGAF00006165135 fastq.gz 3.6 GB Report
EGAF00006166113 fastq.gz 2.9 GB Report
EGAF00006166114 fastq.gz 3.0 GB Report
EGAF00007885619 fastq.gz 40.2 GB Report
EGAF00007885620 fastq.gz 42.5 GB Report
EGAF00007885621 fastq.gz 40.7 GB Report
EGAF00007885622 fastq.gz 42.2 GB Report
EGAF00007896366 fastq.gz 40.9 GB Report
EGAF00007896367 fastq.gz 43.8 GB Report
EGAF00007896368 fastq.gz 40.8 GB Report
EGAF00007896369 fastq.gz 44.3 GB Report
EGAF00007914456 fastq.gz 41.4 GB Report
EGAF00007914457 fastq.gz 45.3 GB Report
EGAF00007914458 fastq.gz 41.6 GB Report
EGAF00007914459 fastq.gz 45.9 GB Report
EGAF50000145236 fastq.gz 36.1 GB
EGAF50000145237 fastq.gz 39.8 GB
EGAF50000145238 fastq.gz 36.4 GB
EGAF50000145239 fastq.gz 39.9 GB
EGAF50000145240 fastq.gz 36.8 GB
EGAF50000145241 fastq.gz 39.8 GB
EGAF50000145242 fastq.gz 37.0 GB
EGAF50000145243 fastq.gz 40.2 GB
EGAF50000145244 fastq.gz 39.4 GB
EGAF50000145245 fastq.gz 41.7 GB
EGAF50000145246 fastq.gz 39.9 GB
EGAF50000145247 fastq.gz 43.4 GB
EGAF50000145248 fastq.gz 38.3 GB
EGAF50000145249 fastq.gz 40.0 GB
EGAF50000145250 fastq.gz 36.6 GB
EGAF50000145251 fastq.gz 37.7 GB
EGAF50000145252 fastq.gz 37.0 GB
EGAF50000145253 fastq.gz 41.0 GB
EGAF50000145254 fastq.gz 37.0 GB
EGAF50000145255 fastq.gz 41.4 GB
EGAF50000145256 fastq.gz 36.8 GB
EGAF50000145257 fastq.gz 41.4 GB
EGAF50000145258 fastq.gz 36.6 GB
EGAF50000145259 fastq.gz 41.7 GB
EGAF50000145260 fastq.gz 39.4 GB
EGAF50000145261 fastq.gz 44.5 GB
EGAF50000145262 fastq.gz 38.3 GB
EGAF50000145263 fastq.gz 42.9 GB
EGAF50000145264 fastq.gz 37.7 GB
EGAF50000145265 fastq.gz 42.7 GB
EGAF50000145266 fastq.gz 38.7 GB
EGAF50000145267 fastq.gz 43.5 GB
EGAF50000145268 fastq.gz 39.2 GB
EGAF50000145269 fastq.gz 41.7 GB
EGAF50000145270 fastq.gz 39.3 GB
EGAF50000145271 fastq.gz 41.8 GB
EGAF50000145272 fastq.gz 40.6 GB
EGAF50000145273 fastq.gz 42.9 GB
EGAF50000145274 fastq.gz 38.8 GB
EGAF50000145275 fastq.gz 40.9 GB
EGAF50000145276 fastq.gz 36.8 GB
EGAF50000145277 fastq.gz 39.6 GB
EGAF50000145278 fastq.gz 36.5 GB
EGAF50000145279 fastq.gz 39.2 GB
EGAF50000145280 fastq.gz 35.2 GB
EGAF50000145281 fastq.gz 39.6 GB
EGAF50000145282 fastq.gz 33.7 GB
EGAF50000145283 fastq.gz 38.8 GB
EGAF50000145292 fastq.gz 40.6 GB
EGAF50000145293 fastq.gz 42.9 GB
EGAF50000145294 fastq.gz 40.0 GB
EGAF50000145295 fastq.gz 42.4 GB
EGAF50000145296 fastq.gz 36.8 GB
EGAF50000145297 fastq.gz 42.4 GB
EGAF50000145298 fastq.gz 36.8 GB
EGAF50000145299 fastq.gz 41.9 GB
EGAF50000145300 fastq.gz 40.6 GB
EGAF50000145301 fastq.gz 40.1 GB
EGAF50000145302 fastq.gz 39.8 GB
EGAF50000145303 fastq.gz 40.2 GB
EGAF50000145304 fastq.gz 39.8 GB
EGAF50000145305 fastq.gz 43.4 GB
EGAF50000145306 fastq.gz 39.3 GB
EGAF50000145307 fastq.gz 43.2 GB
99 Files (4.7 TB)