About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Comparison clinical recommendation MASTER and panel sequencing: RNA data

This dataset contains 19 case/control samples of RNA sequencing data. Sequencing was performed on Illumina HiSeq 4000 and NovaSeq 6000 using TruSeq Stranded mRNA Kit. The sequencing was always paired.

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DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002759 Other
EGAS00001005145 Cancer Genomics
EGAS50000000431 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00001984730 bam 7.3 GB Report
EGAF00005199970 fastq.gz 3.9 GB Report
EGAF00005199971 fastq.gz 4.2 GB Report
EGAF00005200216 fastq.gz 4.0 GB Report
EGAF00005200217 fastq.gz 4.2 GB Report
EGAF00006153567 fastq.gz 2.8 GB Report
EGAF00006153568 fastq.gz 2.9 GB Report
EGAF00006153587 fastq.gz 2.8 GB Report
EGAF00006153588 fastq.gz 2.9 GB Report
EGAF00006153657 fastq.gz 3.6 GB Report
EGAF00006153658 fastq.gz 3.9 GB Report
EGAF00006153961 fastq.gz 3.4 GB Report
EGAF00006153962 fastq.gz 3.8 GB Report
EGAF00006153969 fastq.gz 3.2 GB Report
EGAF00006153970 fastq.gz 3.5 GB Report
EGAF00006154035 fastq.gz 2.7 GB Report
EGAF00006154036 fastq.gz 2.9 GB Report
EGAF00006154159 fastq.gz 3.4 GB Report
EGAF00006154160 fastq.gz 3.7 GB Report
EGAF00006154277 fastq.gz 2.7 GB Report
EGAF00006154278 fastq.gz 2.8 GB Report
EGAF00006154323 fastq.gz 5.2 GB Report
EGAF00006154324 fastq.gz 5.6 GB Report
EGAF00006158441 fastq.gz 39.7 GB Report
EGAF00006158442 fastq.gz 44.0 GB Report
EGAF50000145208 fastq.gz 1.7 GB
EGAF50000145209 fastq.gz 1.8 GB
EGAF50000145210 fastq.gz 1.7 GB
EGAF50000145211 fastq.gz 1.8 GB
EGAF50000145212 fastq.gz 1.8 GB
EGAF50000145213 fastq.gz 1.9 GB
EGAF50000145214 fastq.gz 1.8 GB
EGAF50000145215 fastq.gz 1.9 GB
EGAF50000145216 fastq.gz 3.4 GB
EGAF50000145217 fastq.gz 3.6 GB
EGAF50000145218 fastq.gz 3.4 GB
EGAF50000145219 fastq.gz 3.6 GB
EGAF50000145220 fastq.gz 4.4 GB
EGAF50000145221 fastq.gz 4.5 GB
EGAF50000145222 fastq.gz 4.2 GB
EGAF50000145223 fastq.gz 4.3 GB
EGAF50000145224 fastq.gz 3.0 GB
EGAF50000145225 fastq.gz 3.2 GB
EGAF50000145226 fastq.gz 3.0 GB
EGAF50000145227 fastq.gz 3.2 GB
EGAF50000145228 fastq.gz 2.9 GB
EGAF50000145229 fastq.gz 3.1 GB
EGAF50000145230 fastq.gz 2.9 GB
EGAF50000145231 fastq.gz 3.0 GB
EGAF50000145232 fastq.gz 2.1 GB
EGAF50000145233 fastq.gz 2.2 GB
EGAF50000145234 fastq.gz 2.1 GB
EGAF50000145235 fastq.gz 2.2 GB
EGAF50000145284 fastq.gz 2.7 GB
EGAF50000145285 fastq.gz 2.8 GB
EGAF50000145286 fastq.gz 2.6 GB
EGAF50000145287 fastq.gz 2.7 GB
EGAF50000145288 fastq.gz 3.3 GB
EGAF50000145289 fastq.gz 3.5 GB
EGAF50000145290 fastq.gz 3.4 GB
EGAF50000145291 fastq.gz 3.6 GB
61 Files (272.4 GB)