About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Hi-C in breast healthy, primary cancer and metastatic tissues

Hi-C libraries have been prepared by enzymatic digestion with MboI restriction enzyme and sonication (Covaris). Illumina single-indexig primers have been use to amplify ligated fragments. Hi-C experiments have been performed on 10 slices (50um thick) of fresh-frozen tissues or 10x10e6 Pleural Effusion cells. Raw paired-end fastq.gz files are provided.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000444 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000152134 fastq.gz 2.8 GB Report
EGAF50000152135 fastq.gz 2.7 GB Report
EGAF50000152136 fastq.gz 3.2 GB Report
EGAF50000152137 fastq.gz 3.3 GB Report
EGAF50000152138 fastq.gz 1.5 GB Report
EGAF50000152139 fastq.gz 1.5 GB Report
EGAF50000152140 fastq.gz 4.5 GB Report
EGAF50000152141 fastq.gz 4.5 GB Report
EGAF50000152142 fastq.gz 4.5 GB Report
EGAF50000152143 fastq.gz 4.6 GB Report
EGAF50000152144 fastq.gz 3.4 GB Report
EGAF50000152145 fastq.gz 3.3 GB Report
EGAF50000152146 fastq.gz 3.6 GB Report
EGAF50000152147 fastq.gz 3.5 GB Report
EGAF50000152148 fastq.gz 1.8 GB Report
EGAF50000152149 fastq.gz 1.8 GB Report
EGAF50000152150 fastq.gz 1.9 GB Report
EGAF50000152151 fastq.gz 1.8 GB Report
EGAF50000152152 fastq.gz 5.6 GB Report
EGAF50000152153 fastq.gz 6.0 GB Report
EGAF50000152154 fastq.gz 7.4 GB Report
EGAF50000152155 fastq.gz 6.7 GB Report
EGAF50000152156 fastq.gz 7.2 GB Report
EGAF50000152157 fastq.gz 6.6 GB Report
EGAF50000152158 fastq.gz 6.1 GB Report
EGAF50000152159 fastq.gz 6.6 GB Report
EGAF50000152160 fastq.gz 6.5 GB Report
EGAF50000152161 fastq.gz 6.0 GB Report
EGAF50000152168 fastq.gz 5.1 GB Report
EGAF50000152169 fastq.gz 5.0 GB Report
EGAF50000152170 fastq.gz 2.5 GB Report
EGAF50000152171 fastq.gz 2.5 GB Report
EGAF50000152172 fastq.gz 2.0 GB Report
EGAF50000152173 fastq.gz 2.0 GB Report
EGAF50000152174 fastq.gz 6.0 GB Report
EGAF50000152175 fastq.gz 5.9 GB Report
EGAF50000152176 fastq.gz 823.2 MB Report
EGAF50000152177 fastq.gz 841.1 MB Report
EGAF50000152178 fastq.gz 4.9 GB Report
EGAF50000152179 fastq.gz 4.9 GB Report
EGAF50000152180 fastq.gz 3.5 GB Report
EGAF50000152181 fastq.gz 3.5 GB Report
EGAF50000152182 fastq.gz 6.3 GB Report
EGAF50000152183 fastq.gz 6.2 GB Report
EGAF50000152184 fastq.gz 6.4 GB Report
EGAF50000152185 fastq.gz 6.3 GB Report
EGAF50000152186 fastq.gz 6.2 GB Report
EGAF50000152187 fastq.gz 6.2 GB Report
EGAF50000152188 fastq.gz 6.2 GB Report
EGAF50000152189 fastq.gz 6.2 GB Report
EGAF50000152190 fastq.gz 4.8 GB Report
EGAF50000152191 fastq.gz 4.7 GB Report
EGAF50000152192 fastq.gz 618.5 MB Report
EGAF50000152193 fastq.gz 628.0 MB Report
EGAF50000152194 fastq.gz 7.8 GB Report
EGAF50000152195 fastq.gz 8.7 GB Report
EGAF50000152196 fastq.gz 8.4 GB Report
EGAF50000152197 fastq.gz 7.5 GB Report
EGAF50000152198 fastq.gz 8.1 GB Report
EGAF50000152199 fastq.gz 7.2 GB Report
EGAF50000152200 fastq.gz 7.8 GB Report
EGAF50000152201 fastq.gz 6.9 GB Report
EGAF50000152202 fastq.gz 7.5 GB Report
EGAF50000152203 fastq.gz 6.8 GB Report
EGAF50000152204 fastq.gz 7.3 GB Report
EGAF50000152205 fastq.gz 6.6 GB Report
EGAF50000152206 fastq.gz 8.0 GB Report
EGAF50000152207 fastq.gz 7.9 GB Report
EGAF50000152208 fastq.gz 8.7 GB Report
EGAF50000152209 fastq.gz 8.4 GB Report
EGAF50000152210 fastq.gz 8.6 GB Report
EGAF50000152211 fastq.gz 8.3 GB Report
EGAF50000152212 fastq.gz 6.7 GB Report
EGAF50000152213 fastq.gz 6.6 GB Report
EGAF50000152214 fastq.gz 8.7 GB Report
EGAF50000152215 fastq.gz 9.1 GB Report
EGAF50000152216 fastq.gz 6.0 GB Report
EGAF50000152217 fastq.gz 5.6 GB Report
78 Files (412.4 GB)