About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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PCNSL single cell dataset

Mononuclear cells were isolated as cell suspensions by dissociation in a BD Horizon™ Dri Tumor & Tissue Dissociation Reagent (BD Biosciences) using a gentleMACS dissociator (Miltenyi Biotec). A totalseq-C antibody cocktail (Biolegend) was used, and the cell suspensions were diluted to a concentration of 1,000 cells/μL. Library sequencing was performed using the DNBSEQ-G400 (MGI Tech), Illumina HiSeq 2000, or Illumina NovaSeq 6000 5 (Illumina). The FASTQ files were aligned to the 10x provided reference genome using 10x Genomics Cell Ranger software v7.1.0 to create unique molecular identifier count tables of gene expression of the samples.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

Okayama University Hospital, CGM center - Data Access Policy

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The deposited data is only allowed for qualified researchers. Commercial usage is NOT ALLOWED. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000474 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000162942 fastq.gz 11.6 GB
EGAF50000162943 fastq.gz 1.8 GB
EGAF50000162944 fastq.gz 5.3 GB
EGAF50000162945 fastq.gz 11.7 GB
EGAF50000162946 fastq.gz 32.0 GB
EGAF50000162947 fastq.gz 10.7 GB
EGAF50000162948 fastq.gz 31.8 GB
EGAF50000162949 fastq.gz 6.1 GB
EGAF50000162950 fastq.gz 29.2 GB
EGAF50000162951 fastq.gz 4.9 GB
EGAF50000162952 fastq.gz 16.4 GB
EGAF50000162953 fastq.gz 12.5 GB
EGAF50000162954 fastq.gz 5.6 GB
EGAF50000162955 fastq.gz 14.4 GB
EGAF50000162956 fastq.gz 4.7 GB
EGAF50000162957 fastq.gz 2.1 GB
EGAF50000162958 fastq.gz 2.1 GB
EGAF50000162959 fastq.gz 2.1 GB
EGAF50000162960 fastq.gz 4.4 GB
EGAF50000162961 fastq.gz 349.6 MB
EGAF50000162962 fastq.gz 370.2 MB
EGAF50000162963 fastq.gz 980.4 MB
EGAF50000162964 fastq.gz 2.1 GB
EGAF50000162965 fastq.gz 253.9 MB
EGAF50000162966 fastq.gz 284.9 MB
EGAF50000162967 fastq.gz 4.3 GB
EGAF50000162968 fastq.gz 707.8 MB
EGAF50000162969 fastq.gz 273.0 MB
EGAF50000162970 fastq.gz 285.3 MB
EGAF50000162971 fastq.gz 1.3 GB
EGAF50000162972 fastq.gz 839.5 MB
EGAF50000162973 fastq.gz 1.5 GB
EGAF50000162974 fastq.gz 2.1 GB
EGAF50000162975 fastq.gz 2.4 GB
EGAF50000162976 fastq.gz 7.0 GB
EGAF50000162977 fastq.gz 243.2 MB
EGAF50000162978 fastq.gz 286.4 MB
EGAF50000162979 fastq.gz 691.0 MB
EGAF50000162980 fastq.gz 1.2 GB
EGAF50000162981 fastq.gz 694.4 MB
EGAF50000162982 fastq.gz 807.1 MB
EGAF50000162983 fastq.gz 721.4 MB
EGAF50000162984 fastq.gz 758.9 MB
EGAF50000162985 fastq.gz 11.5 GB
EGAF50000162986 fastq.gz 626.9 MB
EGAF50000162987 fastq.gz 611.5 MB
EGAF50000162988 fastq.gz 341.1 MB
EGAF50000162989 fastq.gz 352.2 MB
EGAF50000162990 fastq.gz 928.6 MB
EGAF50000162991 fastq.gz 330.7 MB
EGAF50000162992 fastq.gz 336.2 MB
EGAF50000162993 fastq.gz 795.8 MB
EGAF50000162994 fastq.gz 2.2 GB
EGAF50000162995 fastq.gz 261.2 MB
EGAF50000162996 fastq.gz 255.2 MB
EGAF50000162997 fastq.gz 691.0 MB
EGAF50000162998 fastq.gz 1.8 GB
EGAF50000162999 fastq.gz 1.6 GB
EGAF50000163000 fastq.gz 1.7 GB
EGAF50000163001 fastq.gz 1.8 GB
EGAF50000163002 fastq.gz 1.6 GB
EGAF50000163003 fastq.gz 1.7 GB
EGAF50000163004 fastq.gz 1.7 GB
EGAF50000163005 fastq.gz 1.9 GB
EGAF50000163006 rds 2.3 GB
EGAF50000163007 rds 3.1 GB
66 Files (278.2 GB)