About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Shallow whole genome sequencing data from circulating tumour DNA (ctDNA) data of High Grade Serous Ovarian Cancer Patients (batch 1)

The dataset contains shallow whole genome sequencing data of 128 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 128 samples are plasma samples that have been collected before treatment. The files provided are paired fastq files.

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DUO:0000007
version: 2019-01-07

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0004992

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2019-01-07

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE).

The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE). See link for full description

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000674 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008609813 fq.gz 484.5 MB Report
EGAF00008609814 fq.gz 264.0 MB Report
EGAF00008609815 fq.gz 262.7 MB Report
EGAF00008609816 fq.gz 490.5 MB Report
EGAF00008609817 fq.gz 294.6 MB Report
EGAF00008609818 fq.gz 626.5 MB Report
EGAF00008609819 fq.gz 291.9 MB Report
EGAF00008609820 fq.gz 650.5 MB Report
EGAF00008609821 fq.gz 341.8 MB Report
EGAF00008609822 fq.gz 339.7 MB Report
EGAF00008609823 fq.gz 243.1 MB Report
EGAF00008609824 fq.gz 242.8 MB Report
EGAF00008609825 fq.gz 288.0 MB Report
EGAF00008609826 fq.gz 291.9 MB Report
EGAF00008609827 fq.gz 348.2 MB Report
EGAF00008609828 fq.gz 345.0 MB Report
EGAF00008609829 fq.gz 365.9 MB Report
EGAF00008609830 fq.gz 371.6 MB Report
EGAF00008609831 fq.gz 414.4 MB Report
EGAF00008609832 fq.gz 418.0 MB Report
EGAF00008609833 fq.gz 344.6 MB Report
EGAF00008609834 fq.gz 342.5 MB Report
EGAF00008609835 fq.gz 293.3 MB Report
EGAF00008609836 fq.gz 297.4 MB Report
EGAF00008609837 fq.gz 316.6 MB Report
EGAF00008609838 fq.gz 325.7 MB Report
EGAF00008609839 fq.gz 385.7 MB Report
EGAF00008609840 fq.gz 394.4 MB Report
EGAF00008609841 fq.gz 344.0 MB Report
EGAF00008609842 fq.gz 342.7 MB Report
EGAF00008609843 fq.gz 358.0 MB Report
EGAF00008609844 fq.gz 358.1 MB Report
EGAF00008609845 fq.gz 360.5 MB Report
EGAF00008609846 fq.gz 285.4 MB Report
EGAF00008609847 fq.gz 286.8 MB Report
EGAF00008609848 fq.gz 366.8 MB Report
EGAF00008609849 fq.gz 391.9 MB Report
EGAF00008609850 fq.gz 274.1 MB Report
EGAF00008609851 fq.gz 398.0 MB Report
EGAF00008609852 fq.gz 276.0 MB Report
EGAF00008609853 fq.gz 437.6 MB Report
EGAF00008609854 fq.gz 300.2 MB Report
EGAF00008609855 fq.gz 455.7 MB Report
EGAF00008609856 fq.gz 305.5 MB Report
EGAF00008609857 fq.gz 364.0 MB Report
EGAF00008609858 fq.gz 360.3 MB Report
EGAF00008609859 fq.gz 224.3 MB Report
EGAF00008609860 fq.gz 224.5 MB Report
EGAF00008609861 fq.gz 376.8 MB Report
EGAF00008609862 fq.gz 374.9 MB Report
EGAF00008609863 fq.gz 253.4 MB Report
EGAF00008609864 fq.gz 251.9 MB Report
EGAF00008609865 fq.gz 364.3 MB Report
EGAF00008609866 fq.gz 370.4 MB Report
EGAF00008609867 fq.gz 353.2 MB Report
EGAF00008609868 fq.gz 356.7 MB Report
EGAF00008609869 fq.gz 297.1 MB Report
EGAF00008609870 fq.gz 298.7 MB Report
EGAF00008609871 fq.gz 244.3 MB Report
EGAF00008609872 fq.gz 246.6 MB Report
EGAF00008609873 fq.gz 241.1 MB Report
EGAF00008609874 fq.gz 246.6 MB Report
EGAF00008609875 fq.gz 360.4 MB Report
EGAF00008609876 fq.gz 365.2 MB Report
EGAF00008609877 fq.gz 383.9 MB Report
EGAF00008609878 fq.gz 245.4 MB Report
EGAF00008609879 fq.gz 391.5 MB Report
EGAF00008609880 fq.gz 244.4 MB Report
EGAF00008609881 fq.gz 269.9 MB Report
EGAF00008609882 fq.gz 269.8 MB Report
EGAF00008609883 fq.gz 393.8 MB Report
EGAF00008609884 fq.gz 257.0 MB Report
EGAF00008609885 fq.gz 42.0 MB Report
EGAF00008609886 fq.gz 262.5 MB Report
EGAF00008609887 fq.gz 392.3 MB Report
EGAF00008609888 fq.gz 43.0 MB Report
EGAF00008609889 fq.gz 301.2 MB Report
EGAF00008609890 fq.gz 298.9 MB Report
EGAF00008609891 fq.gz 318.9 MB Report
EGAF00008609892 fq.gz 321.8 MB Report
EGAF00008609893 fq.gz 189.3 MB Report
EGAF00008609894 fq.gz 189.6 MB Report
EGAF00008609895 fq.gz 165.4 MB Report
EGAF00008609896 fq.gz 167.6 MB Report
EGAF00008609897 fq.gz 295.8 MB Report
EGAF00008609898 fq.gz 294.7 MB Report
EGAF00008609899 fq.gz 249.4 MB Report
EGAF00008609900 fq.gz 249.8 MB Report
EGAF00008609901 fq.gz 51.5 MB Report
EGAF00008609902 fq.gz 51.3 MB Report
EGAF00008609903 fq.gz 254.8 MB Report
EGAF00008609904 fq.gz 249.2 MB Report
EGAF00008609905 fq.gz 479.3 MB Report
EGAF00008609906 fq.gz 499.7 MB Report
EGAF00008609907 fq.gz 467.7 MB Report
EGAF00008609908 fq.gz 470.2 MB Report
EGAF00008609909 fq.gz 374.0 MB Report
EGAF00008609910 fq.gz 389.8 MB Report
EGAF00008609911 fq.gz 382.5 MB Report
EGAF00008609912 fq.gz 396.8 MB Report
EGAF00008609913 fq.gz 282.3 MB Report
EGAF00008609914 fq.gz 281.8 MB Report
EGAF00008609915 fq.gz 428.4 MB Report
EGAF00008609916 fq.gz 443.6 MB Report
EGAF00008609917 fq.gz 322.9 MB Report
EGAF00008609918 fq.gz 329.5 MB Report
EGAF00008609919 fq.gz 395.7 MB Report
EGAF00008609920 fq.gz 407.8 MB Report
EGAF00008609921 fq.gz 389.5 MB Report
EGAF00008609922 fq.gz 363.5 MB Report
EGAF00008609923 fq.gz 401.3 MB Report
EGAF00008609924 fq.gz 371.4 MB Report
EGAF00008609925 fq.gz 492.9 MB Report
EGAF00008609926 fq.gz 350.6 MB Report
EGAF00008609927 fq.gz 504.5 MB Report
EGAF00008609928 fq.gz 196.9 MB Report
EGAF00008609929 fq.gz 357.1 MB Report
EGAF00008609930 fq.gz 193.0 MB Report
EGAF00008609931 fq.gz 349.6 MB Report
EGAF00008609932 fq.gz 353.4 MB Report
EGAF00008609933 fq.gz 352.5 MB Report
EGAF00008609934 fq.gz 353.9 MB Report
EGAF00008609935 fq.gz 383.9 MB Report
EGAF00008609936 fq.gz 386.5 MB Report
EGAF00008609937 fq.gz 391.3 MB Report
EGAF00008609938 fq.gz 396.8 MB Report
EGAF00008609939 fq.gz 400.6 MB Report
EGAF00008609940 fq.gz 406.2 MB Report
EGAF00008609941 fq.gz 341.4 MB Report
EGAF00008609942 fq.gz 344.1 MB Report
EGAF00008609943 fq.gz 414.8 MB Report
EGAF00008609944 fq.gz 229.3 MB Report
EGAF00008609945 fq.gz 423.0 MB Report
EGAF00008609946 fq.gz 233.6 MB Report
EGAF00008609947 fq.gz 370.5 MB Report
EGAF00008609948 fq.gz 381.1 MB Report
EGAF00008609949 fq.gz 449.4 MB Report
EGAF00008609950 fq.gz 450.8 MB Report
EGAF00008609951 fq.gz 457.9 MB Report
EGAF00008609952 fq.gz 463.2 MB Report
EGAF00008609953 fq.gz 392.0 MB Report
EGAF00008609954 fq.gz 400.2 MB Report
EGAF00008609955 fq.gz 272.7 MB Report
EGAF00008609956 fq.gz 278.1 MB Report
EGAF00008609957 fq.gz 250.4 MB Report
EGAF00008609958 fq.gz 257.0 MB Report
EGAF00008609959 fq.gz 151.0 MB Report
EGAF00008609960 fq.gz 151.6 MB Report
EGAF00008609961 fq.gz 294.9 MB Report
EGAF00008609962 fq.gz 301.0 MB Report
EGAF00008609963 fq.gz 360.6 MB Report
EGAF00008609964 fq.gz 368.2 MB Report
EGAF00008609965 fq.gz 372.2 MB Report
EGAF00008609966 fq.gz 378.1 MB Report
EGAF00008609967 fq.gz 401.0 MB Report
EGAF00008609968 fq.gz 402.0 MB Report
EGAF00008609969 fq.gz 536.7 MB Report
EGAF00008609970 fq.gz 261.5 MB Report
EGAF00008609971 fq.gz 266.3 MB Report
EGAF00008609972 fq.gz 535.3 MB Report
EGAF00008609973 fq.gz 435.9 MB Report
EGAF00008609974 fq.gz 431.9 MB Report
EGAF00008609975 fq.gz 363.6 MB Report
EGAF00008609976 fq.gz 365.8 MB Report
EGAF00008609977 fq.gz 285.8 MB Report
EGAF00008609978 fq.gz 284.1 MB Report
EGAF00008609979 fq.gz 426.2 MB Report
EGAF00008609980 fq.gz 430.7 MB Report
EGAF00008609981 fq.gz 610.4 MB Report
EGAF00008609982 fq.gz 370.1 MB Report
EGAF00008609983 fq.gz 625.5 MB Report
EGAF00008609984 fq.gz 378.2 MB Report
EGAF00008609985 fq.gz 527.5 MB Report
EGAF00008609986 fq.gz 531.1 MB Report
EGAF00008609987 fq.gz 380.7 MB Report
EGAF00008609988 fq.gz 379.8 MB Report
EGAF00008609989 fq.gz 330.0 MB Report
EGAF00008609990 fq.gz 334.3 MB Report
EGAF00008609991 fq.gz 321.7 MB Report
EGAF00008609992 fq.gz 324.7 MB Report
EGAF00008609993 fq.gz 440.3 MB Report
EGAF00008609994 fq.gz 441.2 MB Report
EGAF00008609995 fq.gz 366.7 MB Report
EGAF00008609996 fq.gz 39.3 MB Report
EGAF00008609997 fq.gz 365.6 MB Report
EGAF00008609998 fq.gz 38.7 MB Report
EGAF00008609999 fq.gz 302.0 MB Report
EGAF00008610000 fq.gz 295.5 MB Report
EGAF00008610001 fq.gz 302.1 MB Report
EGAF00008610002 fq.gz 118.4 MB Report
EGAF00008610003 fq.gz 304.6 MB Report
EGAF00008610004 fq.gz 121.9 MB Report
EGAF00008610005 fq.gz 275.8 MB Report
EGAF00008610006 fq.gz 283.0 MB Report
EGAF00008610007 fq.gz 1.5 MB Report
EGAF00008610008 fq.gz 273.9 MB Report
EGAF00008610009 fq.gz 1.5 MB Report
EGAF00008610010 fq.gz 280.0 MB Report
EGAF00008610011 fq.gz 429.9 MB Report
EGAF00008610012 fq.gz 38.2 MB Report
EGAF00008610013 fq.gz 37.2 MB Report
EGAF00008610014 fq.gz 427.7 MB Report
EGAF00008610015 fq.gz 265.9 MB Report
EGAF00008610016 fq.gz 273.2 MB Report
EGAF00008610017 fq.gz 444.1 MB Report
EGAF00008610018 fq.gz 32.1 MB Report
EGAF00008610019 fq.gz 445.1 MB Report
EGAF00008610020 fq.gz 32.2 MB Report
EGAF00008610021 fq.gz 471.4 MB Report
EGAF00008610022 fq.gz 480.8 MB Report
EGAF00008610023 fq.gz 235.5 MB Report
EGAF00008610024 fq.gz 230.0 MB Report
EGAF00008610025 fq.gz 255.9 MB Report
EGAF00008610026 fq.gz 260.9 MB Report
EGAF00008610027 fq.gz 204.0 MB Report
EGAF00008610028 fq.gz 205.0 MB Report
EGAF00008610029 fq.gz 317.4 MB Report
EGAF00008610030 fq.gz 321.0 MB Report
EGAF00008610031 fq.gz 211.6 MB Report
EGAF00008610032 fq.gz 207.9 MB Report
EGAF00008610033 fq.gz 104.5 MB Report
EGAF00008610034 fq.gz 106.1 MB Report
EGAF00008610035 fq.gz 283.2 MB Report
EGAF00008610036 fq.gz 286.7 MB Report
EGAF00008610037 fq.gz 267.9 MB Report
EGAF00008610038 fq.gz 271.2 MB Report
EGAF00008610039 fq.gz 49.1 MB Report
EGAF00008610040 fq.gz 455.6 MB Report
EGAF00008610041 fq.gz 48.8 MB Report
EGAF00008610042 fq.gz 460.3 MB Report
EGAF00008610043 fq.gz 240.7 MB Report
EGAF00008610044 fq.gz 234.4 MB Report
EGAF00008610045 fq.gz 280.4 MB Report
EGAF00008610046 fq.gz 557.3 MB Report
EGAF00008610047 fq.gz 285.2 MB Report
EGAF00008610048 fq.gz 565.3 MB Report
EGAF00008610049 fq.gz 363.6 MB Report
EGAF00008610050 fq.gz 373.8 MB Report
EGAF00008610051 fq.gz 382.1 MB Report
EGAF00008610052 fq.gz 369.6 MB Report
EGAF00008610053 fq.gz 270.7 MB Report
EGAF00008610054 fq.gz 461.7 MB Report
EGAF00008610055 fq.gz 271.4 MB Report
EGAF00008610056 fq.gz 461.3 MB Report
EGAF00008610057 fq.gz 337.6 MB Report
EGAF00008610058 fq.gz 341.8 MB Report
EGAF00008610059 fq.gz 260.3 MB Report
EGAF00008610060 fq.gz 264.0 MB Report
EGAF00008610061 fq.gz 318.2 MB Report
EGAF00008610062 fq.gz 326.6 MB Report
EGAF00008610063 fq.gz 455.8 MB Report
EGAF00008610064 fq.gz 39.7 MB Report
EGAF00008610065 fq.gz 463.6 MB Report
EGAF00008610066 fq.gz 40.0 MB Report
EGAF00008610067 fq.gz 792.3 MB Report
EGAF00008610068 fq.gz 226.5 MB Report
EGAF00008610069 fq.gz 222.4 MB Report
EGAF00008610070 fq.gz 824.5 MB Report
EGAF00008610071 fq.gz 523.2 MB Report
EGAF00008610072 fq.gz 335.0 MB Report
EGAF00008610073 fq.gz 532.2 MB Report
EGAF00008610074 fq.gz 333.9 MB Report
EGAF00008610075 fq.gz 382.0 MB Report
EGAF00008610076 fq.gz 384.4 MB Report
EGAF00008610077 fq.gz 339.5 MB Report
EGAF00008610078 fq.gz 350.4 MB Report
EGAF00008610079 fq.gz 342.6 MB Report
EGAF00008610080 fq.gz 359.9 MB Report
EGAF00008610081 fq.gz 278.5 MB Report
EGAF00008610082 fq.gz 288.6 MB Report
EGAF00008610083 fq.gz 244.2 MB Report
EGAF00008610084 fq.gz 249.6 MB Report
EGAF00008610085 fq.gz 335.3 MB Report
EGAF00008610086 fq.gz 347.9 MB Report
EGAF00008610087 fq.gz 315.8 MB Report
EGAF00008610088 fq.gz 328.5 MB Report
EGAF00008610089 fq.gz 413.3 MB Report
EGAF00008610090 fq.gz 1.7 MB Report
EGAF00008610091 fq.gz 417.2 MB Report
EGAF00008610092 fq.gz 360.3 MB Report
EGAF00008610093 fq.gz 1.7 MB Report
EGAF00008610094 fq.gz 370.8 MB Report
EGAF00008610095 fq.gz 365.3 MB Report
EGAF00008610096 fq.gz 374.1 MB Report
284 Files (92.7 GB)