About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Dataset for WGS and RNA samples of acute myeloid leukemia with MNX1 expression

This dataset contains 10 samples of WGS, ATAC, 4C and RNAseq samples of patients with acute myeloid leukemia. The sequencing was performed on Illumina HiSeq 4000, 2000 and HiSeq X using Illumina TruSeq Nano DNA and Agilent Strand Specific RNA Kits. The sequencing was always paired.

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DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000743 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000264074 fastq.gz 37.0 GB Report
EGAF50000264207 fastq.gz 1.5 GB Report
EGAF50000264208 fastq.gz 998.6 MB Report
EGAF50000264238 fastq.gz 1.5 GB Report
EGAF50000264243 fastq.gz 38.1 GB Report
EGAF50000264247 fastq.gz 2.6 GB Report
EGAF50000264248 fastq.gz 39.0 GB Report
EGAF50000264249 fastq.gz 3.3 GB Report
EGAF50000264250 fastq.gz 3.4 GB Report
EGAF50000264251 fastq.gz 43.6 GB Report
EGAF50000264262 fastq.gz 4.0 GB Report
EGAF50000264267 fastq.gz 459.5 MB Report
EGAF50000264268 fastq.gz 311.0 MB Report
EGAF50000264269 fastq.gz 126.9 MB Report
EGAF50000264270 fastq.gz 88.6 MB Report
EGAF50000264374 fastq.gz 655.9 MB Report
EGAF50000264375 fastq.gz 504.7 MB Report
EGAF50000264376 fastq.gz 2.8 GB Report
EGAF50000264377 fastq.gz 3.1 GB Report
EGAF50000264378 fastq.gz 952.7 MB Report
EGAF50000264379 fastq.gz 1.0 GB Report
EGAF50000264380 fastq.gz 949.0 MB Report
EGAF50000264381 fastq.gz 949.2 MB Report
EGAF50000264382 fastq.gz 894.2 MB Report
EGAF50000264383 fastq.gz 951.9 MB Report
EGAF50000264384 fastq.gz 44.0 GB Report
EGAF50000264385 fastq.gz 44.2 GB Report
EGAF50000264386 fastq.gz 40.9 GB Report
EGAF50000264387 fastq.gz 37.4 GB Report
EGAF50000264388 fastq.gz 40.9 GB Report
EGAF50000264523 fastq.gz 38.2 GB Report
EGAF50000264526 fastq.gz 263.5 MB Report
EGAF50000264527 fastq.gz 4.3 GB Report
EGAF50000264528 fastq.gz 779.8 MB Report
EGAF50000264529 fastq.gz 892.8 MB Report
EGAF50000264530 fastq.gz 780.1 MB Report
EGAF50000264531 fastq.gz 820.4 MB Report
EGAF50000264532 fastq.gz 819.6 MB Report
EGAF50000264533 fastq.gz 2.7 GB Report
EGAF50000264534 fastq.gz 38.8 GB Report
EGAF50000264535 fastq.gz 43.5 GB Report
EGAF50000264541 fastq.gz 390.6 MB Report
42 Files (528.6 GB)