About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Targeted DNA sequencing of 44 urothelial cancer samples from 34 Lynch syndrome patients

Targeted Illumina sequencing of 41 tumor tissue samples and 3 urine tumor DNA samples from 34 patients with Lynch syndrome associated urothelial cancer. Target capture was performed using the UroScout hybridization capture panel targeting the coding regions of 25 urothelial cancer genes. Sequencing libraries were constructed using the Twist Biosciences Enzymatic Fragmentation DNA Library Prep kit. Sequencing was performed using an Illumina NovaSeq 6000 instrument with 2x150 bp paired sequencing.

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Data access policy for datasets generated by the Tampere University Computational Biology research group

An online data access agreement is to be filled out by the requester: https://forms.gle/VfxH7E961YyFYECw9 The data access committee will evaluate and approve the request for data access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000831 Resequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000206597 fq.gz 1.4 GB Report
EGAF50000206598 fq.gz 1.4 GB Report
EGAF50000206709 fq.gz 652.0 MB Report
EGAF50000206710 fq.gz 710.9 MB Report
EGAF50000206733 fq.gz 891.2 MB Report
EGAF50000206734 fq.gz 946.2 MB Report
EGAF50000310229 fq.gz 72.2 MB
EGAF50000310230 fq.gz 72.7 MB
EGAF50000310231 fq.gz 64.0 MB
EGAF50000310232 fq.gz 63.1 MB
EGAF50000310233 fq.gz 12.9 MB
EGAF50000310234 fq.gz 13.0 MB
EGAF50000310235 fq.gz 88.3 MB
EGAF50000310236 fq.gz 86.0 MB
EGAF50000310237 fq.gz 26.8 MB
EGAF50000310238 fq.gz 26.9 MB
EGAF50000310239 fq.gz 85.2 MB
EGAF50000310240 fq.gz 83.2 MB
EGAF50000310241 fq.gz 119.2 MB
EGAF50000310242 fq.gz 117.5 MB
EGAF50000310243 fq.gz 44.2 MB
EGAF50000310244 fq.gz 44.1 MB
EGAF50000310245 fq.gz 110.5 MB
EGAF50000310246 fq.gz 111.2 MB
EGAF50000310247 fq.gz 321.2 MB
EGAF50000310248 fq.gz 332.9 MB
EGAF50000310249 fq.gz 75.7 MB
EGAF50000310250 fq.gz 77.9 MB
EGAF50000310251 fq.gz 67.6 MB
EGAF50000310252 fq.gz 65.7 MB
EGAF50000310253 fq.gz 349.4 MB
EGAF50000310254 fq.gz 339.7 MB
EGAF50000310255 fq.gz 42.5 MB
EGAF50000310256 fq.gz 40.8 MB
EGAF50000310257 fq.gz 86.0 MB
EGAF50000310258 fq.gz 83.8 MB
EGAF50000310259 fq.gz 270.9 MB
EGAF50000310260 fq.gz 279.2 MB
EGAF50000310261 fq.gz 36.0 MB
EGAF50000310262 fq.gz 36.3 MB
EGAF50000310263 fq.gz 31.4 MB
EGAF50000310264 fq.gz 30.6 MB
EGAF50000310265 fq.gz 34.0 MB
EGAF50000310266 fq.gz 34.4 MB
EGAF50000310267 fq.gz 71.6 MB
EGAF50000310268 fq.gz 71.3 MB
EGAF50000310269 fq.gz 62.9 MB
EGAF50000310270 fq.gz 62.6 MB
EGAF50000310271 fq.gz 77.0 MB
EGAF50000310272 fq.gz 76.5 MB
EGAF50000310273 fq.gz 70.8 MB
EGAF50000310274 fq.gz 72.4 MB
EGAF50000310275 fq.gz 372.3 MB
EGAF50000310276 fq.gz 381.3 MB
EGAF50000310277 fq.gz 405.0 MB
EGAF50000310278 fq.gz 412.2 MB
EGAF50000310279 fq.gz 24.4 MB
EGAF50000310280 fq.gz 23.8 MB
EGAF50000310281 fq.gz 81.2 MB
EGAF50000310282 fq.gz 80.0 MB
EGAF50000310283 fq.gz 232.8 MB
EGAF50000310284 fq.gz 239.4 MB
EGAF50000310285 fq.gz 102.3 MB
EGAF50000310286 fq.gz 104.8 MB
EGAF50000310287 fq.gz 28.7 MB
EGAF50000310288 fq.gz 27.9 MB
EGAF50000310289 fq.gz 39.0 MB
EGAF50000310290 fq.gz 39.1 MB
EGAF50000310291 fq.gz 140.9 MB
EGAF50000310292 fq.gz 142.2 MB
EGAF50000310293 fq.gz 52.4 MB
EGAF50000310294 fq.gz 53.2 MB
EGAF50000310295 fq.gz 96.2 MB
EGAF50000310296 fq.gz 96.3 MB
EGAF50000310297 fq.gz 45.7 MB
EGAF50000310298 fq.gz 45.5 MB
EGAF50000310299 fq.gz 5.8 MB
EGAF50000310300 fq.gz 5.6 MB
EGAF50000310301 fq.gz 52.9 MB
EGAF50000310302 fq.gz 53.3 MB
EGAF50000310303 fq.gz 193.3 MB
EGAF50000310304 fq.gz 191.5 MB
EGAF50000310305 fq.gz 83.3 MB
EGAF50000310306 fq.gz 85.1 MB
EGAF50000310307 fq.gz 31.9 MB
EGAF50000310308 fq.gz 31.8 MB
EGAF50000310309 fq.gz 149.3 MB
EGAF50000310310 fq.gz 153.3 MB
88 Files (14.7 GB)