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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Enzymatic methylation sequencing of cell-free pediatric brain tumor DNA from cerebrospinal fluid

Enzymatic methylation sequencing data generated from cell-free tumor DNA extracted from cerebrospinal fluid (CSF). CSF was gathered from pediatric brain tumor patients of varying diagnoses treated at Connecticut Children's Medical Center, or from the Children's Brain Tumor Network. After DNA extraction, libraries were prepped using the Enzymatic Methyl-seq V2 kit (New England Biolabs).

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO_0004992

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Tumor methylation data of cfDNA from CSF

This Data Access Agreement (“Agreement”) governs the terms on which access will be granted to the Data, which are provided by The Jackson Laboratory. This Agreement is made between you (“You,” “Your,” or “Licensee”) and The Jackson Laboratory (“Licensor”). This Agreement grants to You a license to the Data subject to Your acceptance of all the terms and conditions contained in this Agreement. Please read the terms and conditions carefully. If You do not agree to these terms, Licensor is unwilling to grant you the license contained in this Agreement. Process to obtain datasets generated by The Jackson Laboratory which are available through the European Genome-phenome Archive (EGA): Please submit your full name, supervisor's name if applicable, Institution's name and detailed research aims (internal non-commercial research) with your online request for review by the Data Access Committee (DAC). This dataset is governed by a Data Access Agreement which will be sent to your institutional email for review and signature by your Institution's Legal representative upon approval of your research aims by the DAC. Access will be granted to qualified researchers. Any questions, contact data_access@jax.org.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000871 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000314054 fastq.gz 15.1 GB
EGAF50000314055 fastq.gz 13.9 GB
EGAF50000314056 fastq.gz 9.0 GB
EGAF50000314057 fastq.gz 8.9 GB
EGAF50000314058 fastq.gz 7.5 GB
EGAF50000314059 fastq.gz 7.1 GB
EGAF50000314060 fastq.gz 16.7 GB
EGAF50000314061 fastq.gz 6.8 GB
EGAF50000314062 fastq.gz 15.7 GB
EGAF50000314063 fastq.gz 15.9 GB
EGAF50000314064 fastq.gz 8.7 GB
EGAF50000314065 fastq.gz 9.0 GB
EGAF50000314066 fastq.gz 6.3 GB
EGAF50000314067 fastq.gz 6.5 GB
EGAF50000314068 fastq.gz 6.5 GB
EGAF50000314069 fastq.gz 8.8 GB
EGAF50000314070 fastq.gz 9.2 GB
EGAF50000314071 fastq.gz 7.7 GB
EGAF50000314072 fastq.gz 10.0 GB
EGAF50000314073 fastq.gz 10.4 GB
EGAF50000314074 fastq.gz 6.7 GB
EGAF50000314075 fastq.gz 8.0 GB
EGAF50000314076 fastq.gz 7.1 GB
EGAF50000314077 fastq.gz 13.1 GB
EGAF50000314078 fastq.gz 7.1 GB
EGAF50000314079 fastq.gz 7.3 GB
EGAF50000314080 fastq.gz 7.3 GB
EGAF50000314081 fastq.gz 7.2 GB
EGAF50000314082 fastq.gz 10.0 GB
EGAF50000314083 fastq.gz 9.7 GB
EGAF50000314084 fastq.gz 9.9 GB
EGAF50000314085 fastq.gz 8.8 GB
EGAF50000314086 fastq.gz 9.1 GB
EGAF50000314087 fastq.gz 14.3 GB
EGAF50000314088 fastq.gz 13.8 GB
EGAF50000314089 fastq.gz 14.6 GB
EGAF50000314090 fastq.gz 14.9 GB
EGAF50000314091 fastq.gz 15.7 GB
EGAF50000314092 fastq.gz 8.6 GB
EGAF50000314093 fastq.gz 8.8 GB
EGAF50000314094 fastq.gz 8.8 GB
EGAF50000314095 fastq.gz 8.8 GB
EGAF50000314096 fastq.gz 9.0 GB
EGAF50000314097 fastq.gz 8.5 GB
EGAF50000314098 fastq.gz 8.7 GB
EGAF50000314099 fastq.gz 10.1 GB
EGAF50000314100 fastq.gz 10.4 GB
EGAF50000314101 fastq.gz 7.9 GB
EGAF50000314102 fastq.gz 8.2 GB
EGAF50000314103 fastq.gz 8.1 GB
EGAF50000314104 fastq.gz 8.4 GB
EGAF50000314105 fastq.gz 8.1 GB
EGAF50000314106 fastq.gz 8.4 GB
EGAF50000314107 fastq.gz 8.1 GB
EGAF50000314108 fastq.gz 8.4 GB
EGAF50000314109 fastq.gz 6.7 GB
EGAF50000314110 fastq.gz 7.0 GB
EGAF50000314111 fastq.gz 8.8 GB
EGAF50000314112 fastq.gz 9.1 GB
EGAF50000314113 fastq.gz 9.9 GB
EGAF50000314114 fastq.gz 10.1 GB
EGAF50000314115 fastq.gz 9.8 GB
EGAF50000314116 fastq.gz 9.7 GB
EGAF50000314117 fastq.gz 10.0 GB
EGAF50000314118 fastq.gz 7.0 GB
EGAF50000314119 fastq.gz 6.9 GB
EGAF50000314120 fastq.gz 7.1 GB
EGAF50000314121 fastq.gz 6.9 GB
EGAF50000314122 fastq.gz 6.9 GB
EGAF50000314123 fastq.gz 7.0 GB
EGAF50000314124 fastq.gz 7.5 GB
EGAF50000314125 fastq.gz 7.1 GB
EGAF50000314126 fastq.gz 7.2 GB
EGAF50000314127 fastq.gz 17.3 GB
EGAF50000314128 fastq.gz 13.8 GB
EGAF50000314129 fastq.gz 12.4 GB
EGAF50000314130 fastq.gz 13.2 GB
EGAF50000314131 fastq.gz 15.9 GB
EGAF50000314132 fastq.gz 10.0 GB
EGAF50000314133 fastq.gz 10.3 GB
EGAF50000314134 fastq.gz 10.0 GB
EGAF50000314135 fastq.gz 8.7 GB
EGAF50000314136 fastq.gz 10.5 GB
EGAF50000314137 fastq.gz 10.8 GB
EGAF50000314138 fastq.gz 10.5 GB
EGAF50000314139 fastq.gz 10.8 GB
EGAF50000314140 fastq.gz 6.7 GB
EGAF50000314141 fastq.gz 7.0 GB
EGAF50000314142 fastq.gz 6.7 GB
EGAF50000314143 fastq.gz 6.5 GB
EGAF50000314144 fastq.gz 7.4 GB
EGAF50000314145 fastq.gz 7.5 GB
EGAF50000314146 fastq.gz 7.5 GB
EGAF50000314147 fastq.gz 7.7 GB
EGAF50000314148 fastq.gz 7.5 GB
EGAF50000314149 fastq.gz 7.7 GB
EGAF50000314150 fastq.gz 9.7 GB
EGAF50000314151 fastq.gz 10.0 GB
EGAF50000314152 fastq.gz 9.7 GB
EGAF50000314153 fastq.gz 9.5 GB
EGAF50000314154 fastq.gz 9.7 GB
EGAF50000314155 fastq.gz 8.1 GB
EGAF50000314156 fastq.gz 8.4 GB
EGAF50000314157 fastq.gz 8.2 GB
EGAF50000314158 fastq.gz 8.5 GB
EGAF50000314159 fastq.gz 8.2 GB
EGAF50000314160 fastq.gz 8.5 GB
EGAF50000314161 fastq.gz 10.8 GB
EGAF50000314162 fastq.gz 11.2 GB
EGAF50000314163 fastq.gz 10.8 GB
EGAF50000314164 fastq.gz 10.7 GB
EGAF50000314165 fastq.gz 11.1 GB
EGAF50000314166 fastq.gz 14.3 GB
EGAF50000314167 fastq.gz 15.2 GB
EGAF50000314168 fastq.gz 10.4 GB
EGAF50000314169 fastq.gz 10.8 GB
EGAF50000314170 fastq.gz 8.5 GB
EGAF50000314171 fastq.gz 8.7 GB
EGAF50000314172 fastq.gz 8.8 GB
EGAF50000314173 fastq.gz 9.0 GB
EGAF50000314174 fastq.gz 9.4 GB
EGAF50000314175 fastq.gz 9.6 GB
EGAF50000314176 fastq.gz 8.9 GB
EGAF50000314177 fastq.gz 9.3 GB
EGAF50000314178 fastq.gz 8.9 GB
EGAF50000314179 fastq.gz 9.3 GB
EGAF50000314180 fastq.gz 8.9 GB
EGAF50000314181 fastq.gz 9.3 GB
EGAF50000314182 fastq.gz 8.8 GB
EGAF50000314183 fastq.gz 9.2 GB
EGAF50000314184 fastq.gz 8.8 GB
EGAF50000314185 fastq.gz 8.7 GB
EGAF50000314186 fastq.gz 9.2 GB
EGAF50000314187 fastq.gz 8.5 GB
EGAF50000314188 fastq.gz 8.9 GB
EGAF50000314189 fastq.gz 8.2 GB
EGAF50000314190 fastq.gz 8.4 GB
EGAF50000314191 fastq.gz 8.3 GB
EGAF50000314192 fastq.gz 8.6 GB
EGAF50000314193 fastq.gz 8.6 GB
EGAF50000314194 fastq.gz 8.2 GB
EGAF50000314195 fastq.gz 8.5 GB
EGAF50000314196 fastq.gz 8.3 GB
EGAF50000314197 fastq.gz 8.6 GB
EGAF50000314198 fastq.gz 8.2 GB
EGAF50000314199 fastq.gz 8.5 GB
EGAF50000314200 fastq.gz 8.2 GB
EGAF50000314201 fastq.gz 8.4 GB
EGAF50000314202 fastq.gz 8.2 GB
EGAF50000314203 fastq.gz 7.3 GB
EGAF50000314204 fastq.gz 7.2 GB
EGAF50000314205 fastq.gz 7.4 GB
EGAF50000314206 fastq.gz 7.3 GB
EGAF50000314207 fastq.gz 7.4 GB
EGAF50000314208 fastq.gz 7.1 GB
EGAF50000314209 fastq.gz 7.3 GB
EGAF50000314210 fastq.gz 7.3 GB
EGAF50000314211 fastq.gz 7.4 GB
EGAF50000314212 fastq.gz 6.9 GB
EGAF50000314213 fastq.gz 7.0 GB
EGAF50000314214 fastq.gz 7.0 GB
EGAF50000314215 fastq.gz 6.3 GB
EGAF50000314216 fastq.gz 6.5 GB
EGAF50000314217 fastq.gz 6.4 GB
EGAF50000314218 fastq.gz 6.6 GB
EGAF50000314219 fastq.gz 6.4 GB
EGAF50000314220 fastq.gz 6.6 GB
EGAF50000314221 fastq.gz 6.4 GB
EGAF50000314222 fastq.gz 6.6 GB
EGAF50000314223 fastq.gz 6.8 GB
EGAF50000314224 fastq.gz 7.1 GB
EGAF50000314225 fastq.gz 6.6 GB
EGAF50000314226 fastq.gz 6.9 GB
EGAF50000314227 fastq.gz 6.4 GB
EGAF50000314228 fastq.gz 6.8 GB
EGAF50000314229 fastq.gz 6.5 GB
EGAF50000314230 fastq.gz 6.3 GB
EGAF50000314231 fastq.gz 6.4 GB
EGAF50000314232 fastq.gz 6.2 GB
EGAF50000314233 fastq.gz 6.5 GB
EGAF50000314234 fastq.gz 6.7 GB
EGAF50000314235 fastq.gz 8.2 GB
EGAF50000314236 fastq.gz 8.2 GB
EGAF50000314237 fastq.gz 9.0 GB
EGAF50000314238 fastq.gz 9.0 GB
EGAF50000314239 fastq.gz 10.1 GB
EGAF50000314240 fastq.gz 10.3 GB
EGAF50000314241 fastq.gz 10.8 GB
EGAF50000314242 fastq.gz 7.0 GB
EGAF50000314243 fastq.gz 11.2 GB
EGAF50000314244 fastq.gz 9.2 GB
EGAF50000314245 fastq.gz 6.9 GB
EGAF50000314246 fastq.gz 13.1 GB
EGAF50000314247 fastq.gz 7.2 GB
EGAF50000314248 fastq.gz 7.2 GB
EGAF50000314249 fastq.gz 9.7 GB
EGAF50000314250 fastq.gz 9.9 GB
EGAF50000314251 fastq.gz 6.6 GB
EGAF50000314252 fastq.gz 6.5 GB
EGAF50000314253 fastq.gz 6.6 GB
EGAF50000314254 fastq.gz 6.6 GB
EGAF50000314255 fastq.gz 17.0 GB
EGAF50000314256 fastq.gz 16.9 GB
EGAF50000314257 fastq.gz 8.7 GB
EGAF50000314258 fastq.gz 15.5 GB
EGAF50000314259 fastq.gz 15.6 GB
EGAF50000314260 fastq.gz 8.5 GB
EGAF50000314261 fastq.gz 14.3 GB
EGAF50000314262 fastq.gz 10.2 GB
EGAF50000314263 fastq.gz 7.1 GB
EGAF50000314264 fastq.gz 7.0 GB
EGAF50000314265 fastq.gz 6.8 GB
EGAF50000314266 fastq.gz 6.3 GB
EGAF50000314267 fastq.gz 6.6 GB
EGAF50000314268 fastq.gz 15.0 GB
EGAF50000314269 fastq.gz 8.8 GB
EGAF50000314270 fastq.gz 15.3 GB
EGAF50000314271 fastq.gz 7.1 GB
218 Files (2.0 TB)