Tumor Profiler Project - OV scDNA data
The dataset contains 10x Chromium single-cell DNA sequencing data from 42 samples from 38 different patients with ovarian cancer. 35 samples were collected from the tumor, and 7 samples from ascites. Sequencing was performed in paired-end mode and sequencing data is provided in fastq format.
- 26/03/2025
- 42 samples
- DAC: EGAC50000000199
- Technologies: Illumina NovaSeq 6000, NextSeq 500
DUO:0000021 version: 2021-02-23
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000022 version: 2021-02-23
geographical restriction
This data use modifier indicates that use is limited to within a specific geographic region.
Tumor Profiler Data Access Agreement
Data sharing for the TuPro Study datasets is limited to countries deemed to provide an adequate level of data protection under Swiss legislation (https://www.bj.admin.ch/bj/en/home/staat/datenschutz/internationales/anerkennung-staaten.html) in compliance with the Swiss Human Research Act and the conditions specified in patient informed consent.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000885 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000318460 | fastq.gz | 2.6 GB |
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| EGAF50000318464 | fastq.gz | 9.2 GB |
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| EGAF50000318465 | fastq.gz | 8.9 GB |
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| EGAF50000318466 | fastq.gz | 10.5 GB |
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| EGAF50000318468 | fastq.gz | 11.0 GB |
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| EGAF50000318478 | fastq.gz | 3.5 GB |
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| EGAF50000318479 | fastq.gz | 2.1 GB |
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| EGAF50000318480 | fastq.gz | 2.5 GB |
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| EGAF50000318481 | fastq.gz | 2.1 GB |
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| EGAF50000318482 | fastq.gz | 2.0 GB |
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| EGAF50000318483 | fastq.gz | 1.7 GB |
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| EGAF50000318484 | fastq.gz | 11.2 GB |
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| EGAF50000318485 | fastq.gz | 13.0 GB |
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| EGAF50000318486 | fastq.gz | 2.9 GB |
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| EGAF50000318487 | fastq.gz | 3.5 GB |
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| EGAF50000318488 | fastq.gz | 4.7 GB |
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| EGAF50000318536 | fastq.gz | 3.4 GB |
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| EGAF50000318537 | fastq.gz | 3.4 GB |
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| EGAF50000318538 | fastq.gz | 2.9 GB |
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| EGAF50000318539 | fastq.gz | 3.4 GB |
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| EGAF50000318548 | fastq.gz | 3.5 GB |
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| EGAF50000318549 | fastq.gz | 2.8 GB |
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| EGAF50000318555 | fastq.gz | 7.3 GB |
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| EGAF50000318556 | fastq.gz | 6.0 GB |
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| EGAF50000318557 | fastq.gz | 3.7 GB |
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| EGAF50000318558 | fastq.gz | 2.5 GB |
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| EGAF50000318559 | fastq.gz | 2.1 GB |
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| EGAF50000318560 | fastq.gz | 2.5 GB |
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| EGAF50000318561 | fastq.gz | 1.4 GB |
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| EGAF50000318562 | fastq.gz | 3.7 GB |
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| EGAF50000318563 | fastq.gz | 4.4 GB |
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| EGAF50000318564 | fastq.gz | 4.4 GB |
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| EGAF50000318565 | fastq.gz | 2.8 GB |
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| EGAF50000318566 | fastq.gz | 1.6 GB |
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| EGAF50000318567 | fastq.gz | 1.6 GB |
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| EGAF50000318568 | fastq.gz | 3.0 GB |
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| EGAF50000318569 | fastq.gz | 2.6 GB |
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| EGAF50000318570 | fastq.gz | 3.0 GB |
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| EGAF50000318571 | fastq.gz | 2.8 GB |
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| EGAF50000318572 | fastq.gz | 3.3 GB |
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| EGAF50000318573 | fastq.gz | 2.8 GB |
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| EGAF50000318574 | fastq.gz | 3.3 GB |
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| EGAF50000318575 | fastq.gz | 3.3 GB |
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| EGAF50000318576 | fastq.gz | 2.9 GB |
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| EGAF50000318577 | fastq.gz | 2.5 GB |
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| EGAF50000318578 | fastq.gz | 2.5 GB |
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| EGAF50000318579 | fastq.gz | 3.2 GB |
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| EGAF50000318580 | fastq.gz | 2.7 GB |
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| EGAF50000318581 | fastq.gz | 6.9 GB |
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| EGAF50000318582 | fastq.gz | 12.5 GB |
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| EGAF50000318585 | fastq.gz | 4.9 GB |
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| EGAF50000318586 | fastq.gz | 5.8 GB |
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| EGAF50000318587 | fastq.gz | 6.9 GB |
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| EGAF50000318588 | fastq.gz | 7.2 GB |
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| EGAF50000318589 | fastq.gz | 3.5 GB |
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| EGAF50000318590 | fastq.gz | 12.8 GB |
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| EGAF50000318591 | fastq.gz | 10.6 GB |
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| EGAF50000318592 | fastq.gz | 9.0 GB |
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| EGAF50000318593 | fastq.gz | 15.7 GB |
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| EGAF50000318594 | fastq.gz | 13.0 GB |
|
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| EGAF50000318595 | fastq.gz | 15.2 GB |
|
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| EGAF50000318596 | fastq.gz | 17.5 GB |
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| EGAF50000318602 | fastq.gz | 2.7 GB |
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| EGAF50000318603 | fastq.gz | 3.0 GB |
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| EGAF50000318604 | fastq.gz | 4.9 GB |
|
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| EGAF50000318605 | fastq.gz | 2.5 GB |
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| EGAF50000318606 | fastq.gz | 3.4 GB |
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| EGAF50000318607 | fastq.gz | 2.8 GB |
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| EGAF50000318608 | fastq.gz | 2.7 GB |
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| EGAF50000318609 | fastq.gz | 2.7 GB |
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| EGAF50000318610 | fastq.gz | 2.2 GB |
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| EGAF50000318611 | fastq.gz | 2.7 GB |
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| EGAF50000318612 | fastq.gz | 6.0 GB |
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| EGAF50000318613 | fastq.gz | 4.1 GB |
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| EGAF50000318698 | fastq.gz | 2.8 GB |
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| EGAF50000318699 | fastq.gz | 2.9 GB |
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| EGAF50000318712 | fastq.gz | 3.5 GB |
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| EGAF50000318713 | fastq.gz | 4.2 GB |
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| EGAF50000318714 | fastq.gz | 3.5 GB |
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| EGAF50000318715 | fastq.gz | 4.1 GB |
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| EGAF50000318716 | fastq.gz | 3.5 GB |
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| EGAF50000318717 | fastq.gz | 4.2 GB |
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| EGAF50000318718 | fastq.gz | 3.5 GB |
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| EGAF50000318719 | fastq.gz | 4.2 GB |
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| EGAF50000318720 | fastq.gz | 2.9 GB |
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| EGAF50000318721 | fastq.gz | 3.4 GB |
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| EGAF50000318722 | fastq.gz | 2.9 GB |
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| EGAF50000318723 | fastq.gz | 2.9 GB |
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| EGAF50000318724 | fastq.gz | 3.5 GB |
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| EGAF50000318725 | fastq.gz | 2.5 GB |
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| EGAF50000318726 | fastq.gz | 2.1 GB |
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| EGAF50000318727 | fastq.gz | 2.5 GB |
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| EGAF50000318728 | fastq.gz | 2.1 GB |
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| EGAF50000318729 | fastq.gz | 2.5 GB |
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| EGAF50000318730 | fastq.gz | 3.1 GB |
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| EGAF50000318731 | fastq.gz | 2.5 GB |
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| EGAF50000318732 | fastq.gz | 3.1 GB |
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| EGAF50000318733 | fastq.gz | 2.6 GB |
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| EGAF50000318734 | fastq.gz | 3.1 GB |
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| EGAF50000318735 | fastq.gz | 3.1 GB |
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| EGAF50000318736 | fastq.gz | 2.3 GB |
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| EGAF50000318737 | fastq.gz | 2.8 GB |
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| EGAF50000318738 | fastq.gz | 2.3 GB |
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| EGAF50000318739 | fastq.gz | 2.4 GB |
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| EGAF50000318740 | fastq.gz | 2.8 GB |
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| EGAF50000318741 | fastq.gz | 2.3 GB |
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| EGAF50000318742 | fastq.gz | 2.8 GB |
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| EGAF50000318743 | fastq.gz | 1.1 GB |
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| EGAF50000318744 | fastq.gz | 1.4 GB |
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| EGAF50000318745 | fastq.gz | 1.1 GB |
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| EGAF50000318746 | fastq.gz | 1.4 GB |
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| EGAF50000318747 | fastq.gz | 1.1 GB |
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| EGAF50000318748 | fastq.gz | 1.4 GB |
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| EGAF50000318749 | fastq.gz | 1.1 GB |
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| EGAF50000318750 | fastq.gz | 2.1 GB |
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| EGAF50000318751 | fastq.gz | 2.5 GB |
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| EGAF50000318752 | fastq.gz | 2.1 GB |
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| EGAF50000318753 | fastq.gz | 2.5 GB |
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| EGAF50000318754 | fastq.gz | 2.1 GB |
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| EGAF50000318755 | fastq.gz | 2.4 GB |
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| EGAF50000318756 | fastq.gz | 2.7 GB |
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| EGAF50000318757 | fastq.gz | 3.3 GB |
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| EGAF50000318758 | fastq.gz | 2.8 GB |
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| EGAF50000318759 | fastq.gz | 3.3 GB |
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| EGAF50000318760 | fastq.gz | 2.8 GB |
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| EGAF50000318761 | fastq.gz | 3.4 GB |
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| EGAF50000318762 | fastq.gz | 2.8 GB |
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| EGAF50000318763 | fastq.gz | 3.4 GB |
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| EGAF50000318764 | fastq.gz | 2.9 GB |
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| EGAF50000318765 | fastq.gz | 2.5 GB |
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| EGAF50000318766 | fastq.gz | 3.0 GB |
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| EGAF50000318767 | fastq.gz | 2.5 GB |
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| EGAF50000318768 | fastq.gz | 3.0 GB |
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| EGAF50000318769 | fastq.gz | 2.5 GB |
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| EGAF50000318770 | fastq.gz | 4.4 GB |
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| EGAF50000318771 | fastq.gz | 3.6 GB |
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| EGAF50000318772 | fastq.gz | 4.3 GB |
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| EGAF50000318773 | fastq.gz | 3.7 GB |
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| EGAF50000318774 | fastq.gz | 2.8 GB |
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| EGAF50000318775 | fastq.gz | 3.3 GB |
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| EGAF50000318776 | fastq.gz | 2.8 GB |
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| EGAF50000318777 | fastq.gz | 3.3 GB |
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| EGAF50000318778 | fastq.gz | 2.9 GB |
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| EGAF50000318779 | fastq.gz | 3.3 GB |
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| EGAF50000318780 | fastq.gz | 3.3 GB |
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| EGAF50000318781 | fastq.gz | 2.0 GB |
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| EGAF50000318782 | fastq.gz | 2.0 GB |
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| EGAF50000318783 | fastq.gz | 1.7 GB |
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| EGAF50000318784 | fastq.gz | 2.0 GB |
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| EGAF50000318785 | fastq.gz | 4.1 GB |
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| EGAF50000318786 | fastq.gz | 4.9 GB |
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| EGAF50000318787 | fastq.gz | 4.0 GB |
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| EGAF50000318788 | fastq.gz | 4.8 GB |
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| EGAF50000318789 | fastq.gz | 4.1 GB |
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| EGAF50000318790 | fastq.gz | 4.1 GB |
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| EGAF50000318791 | fastq.gz | 4.9 GB |
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| EGAF50000318792 | fastq.gz | 2.5 GB |
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| EGAF50000318793 | fastq.gz | 2.9 GB |
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| EGAF50000318794 | fastq.gz | 3.4 GB |
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| EGAF50000318795 | fastq.gz | 2.9 GB |
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| EGAF50000318796 | fastq.gz | 3.3 GB |
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| EGAF50000318797 | fastq.gz | 2.9 GB |
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| EGAF50000318798 | fastq.gz | 3.0 GB |
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| EGAF50000318799 | fastq.gz | 2.5 GB |
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| EGAF50000318800 | fastq.gz | 3.0 GB |
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| EGAF50000318801 | fastq.gz | 2.5 GB |
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| EGAF50000318802 | fastq.gz | 3.0 GB |
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| EGAF50000318803 | fastq.gz | 4.0 GB |
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| EGAF50000318804 | fastq.gz | 4.7 GB |
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| EGAF50000318805 | fastq.gz | 3.9 GB |
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| EGAF50000318806 | fastq.gz | 4.7 GB |
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| EGAF50000318807 | fastq.gz | 3.9 GB |
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| EGAF50000318808 | fastq.gz | 4.7 GB |
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| EGAF50000318809 | fastq.gz | 4.0 GB |
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| EGAF50000318814 | fastq.gz | 2.6 GB |
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| EGAF50000318815 | fastq.gz | 3.1 GB |
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| EGAF50000318816 | fastq.gz | 3.2 GB |
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| EGAF50000318817 | fastq.gz | 2.7 GB |
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| EGAF50000318818 | fastq.gz | 3.2 GB |
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| EGAF50000318819 | fastq.gz | 2.3 GB |
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| EGAF50000318820 | fastq.gz | 2.2 GB |
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| EGAF50000318821 | fastq.gz | 2.7 GB |
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| EGAF50000318822 | fastq.gz | 2.2 GB |
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| EGAF50000318823 | fastq.gz | 6.4 GB |
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| EGAF50000318824 | fastq.gz | 7.5 GB |
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| EGAF50000318825 | fastq.gz | 11.4 GB |
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| EGAF50000318826 | fastq.gz | 11.1 GB |
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| EGAF50000318827 | fastq.gz | 7.8 GB |
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| EGAF50000318829 | fastq.gz | 15.2 GB |
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| EGAF50000318830 | fastq.gz | 12.5 GB |
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| EGAF50000318835 | fastq.gz | 9.4 GB |
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| EGAF50000318836 | fastq.gz | 11.0 GB |
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| EGAF50000318837 | fastq.gz | 11.0 GB |
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| EGAF50000318838 | fastq.gz | 10.7 GB |
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| EGAF50000318839 | fastq.gz | 12.2 GB |
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| EGAF50000318842 | fastq.gz | 5.0 GB |
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| EGAF50000318843 | fastq.gz | 5.9 GB |
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| EGAF50000318844 | fastq.gz | 5.8 GB |
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| EGAF50000318845 | fastq.gz | 5.6 GB |
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| EGAF50000318847 | fastq.gz | 5.5 GB |
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| EGAF50000318848 | fastq.gz | 6.5 GB |
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| EGAF50000318849 | fastq.gz | 7.1 GB |
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| EGAF50000318850 | fastq.gz | 6.1 GB |
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| EGAF50000318851 | fastq.gz | 4.1 GB |
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| EGAF50000318852 | fastq.gz | 3.4 GB |
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| EGAF50000318853 | fastq.gz | 7.2 GB |
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| EGAF50000318854 | fastq.gz | 8.4 GB |
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| EGAF50000318855 | fastq.gz | 16.9 GB |
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| EGAF50000318856 | fastq.gz | 19.9 GB |
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| EGAF50000318857 | fastq.gz | 16.7 GB |
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| EGAF50000318858 | fastq.gz | 19.8 GB |
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| EGAF50000318859 | fastq.gz | 14.4 GB |
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| EGAF50000318860 | fastq.gz | 16.9 GB |
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| EGAF50000318861 | fastq.gz | 14.2 GB |
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| EGAF50000318862 | fastq.gz | 16.8 GB |
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| EGAF50000318863 | fastq.gz | 11.0 GB |
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| EGAF50000318864 | fastq.gz | 13.4 GB |
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| EGAF50000318865 | fastq.gz | 15.6 GB |
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| EGAF50000318866 | fastq.gz | 9.0 GB |
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| EGAF50000318867 | fastq.gz | 9.5 GB |
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| EGAF50000318868 | fastq.gz | 11.1 GB |
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| EGAF50000318869 | fastq.gz | 9.5 GB |
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| EGAF50000318870 | fastq.gz | 11.1 GB |
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| EGAF50000318871 | fastq.gz | 13.4 GB |
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| EGAF50000318872 | fastq.gz | 17.7 GB |
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| EGAF50000318908 | fastq.gz | 2.6 GB |
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| EGAF50000318935 | fastq.gz | 8.1 GB |
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| EGAF50000318936 | fastq.gz | 9.4 GB |
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| EGAF50000318946 | fastq.gz | 2.8 GB |
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| EGAF50000318947 | fastq.gz | 3.3 GB |
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| EGAF50000318948 | fastq.gz | 14.7 GB |
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| EGAF50000319004 | fastq.gz | 6.6 GB |
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| EGAF50000319005 | fastq.gz | 2.5 GB |
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| EGAF50000319006 | fastq.gz | 3.0 GB |
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| EGAF50000319007 | fastq.gz | 7.8 GB |
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| EGAF50000319008 | fastq.gz | 9.1 GB |
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| EGAF50000319011 | fastq.gz | 2.5 GB |
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| EGAF50000319012 | fastq.gz | 3.0 GB |
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| EGAF50000319013 | fastq.gz | 3.4 GB |
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| EGAF50000319014 | fastq.gz | 2.8 GB |
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| EGAF50000319021 | fastq.gz | 10.6 GB |
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| EGAF50000319022 | fastq.gz | 20.9 GB |
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| EGAF50000319023 | fastq.gz | 9.8 GB |
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| EGAF50000319025 | fastq.gz | 20.7 GB |
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| EGAF50000319027 | fastq.gz | 10.4 GB |
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| EGAF50000319031 | fastq.gz | 9.1 GB |
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| EGAF50000319032 | fastq.gz | 7.8 GB |
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| EGAF50000319033 | fastq.gz | 9.1 GB |
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| EGAF50000319034 | fastq.gz | 12.9 GB |
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| EGAF50000319035 | fastq.gz | 9.4 GB |
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| 250 Files (1.4 TB) | ||||