About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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NGS-Based Mutational Analysis of 87 PMBL Patients from the GAINED Cohort (Subset of 382 Sequenced Patients)

Targeted DNA sequencing was performed on DNA extracted from 87 formalin-fixed paraffin-embedded (FFPE) samples, representing a subset of the 382 sequenced patients from the GAINED cohort. A custom “Lymphopanel” was used to identify mutations in 70 genes associated with lymphomagenesis. Library preparation, exome capture, sequencing, and analysis were conducted by IntegraGen SA (Evry, France). Sequencing was performed on an Illumina HiSeq4000 platform, with variant calling and annotation using established bioinformatics tools such as MuTect and VEP.

Request Access

DUO:0000024
version: 2021-02-23

publication moratorium

This data use modifier indicates that requestor agrees not to publish results of studies until a specific date.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Data Policy access of PMBL cohort

Data requests must be sent to Dr Fabienne Desmots: fabienne.desmots-loyer@chu-rennes.fr or Dr Vincent Camus vincent.camus@chb.unicancer.fr

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000929 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000330499 fastq.gz 38.4 MB
EGAF50000330500 fastq.gz 139.5 MB
EGAF50000330501 fastq.gz 152.5 MB
EGAF50000330502 fastq.gz 41.0 MB
EGAF50000330503 fastq.gz 146.0 MB
EGAF50000330504 fastq.gz 165.2 MB
EGAF50000330505 fastq.gz 30.9 MB
EGAF50000330506 fastq.gz 130.4 MB
EGAF50000330507 fastq.gz 144.7 MB
EGAF50000330508 fastq.gz 132.9 MB
EGAF50000330509 fastq.gz 37.9 MB
EGAF50000330510 fastq.gz 20.8 MB
EGAF50000330511 fastq.gz 50.1 MB
EGAF50000330512 fastq.gz 31.7 MB
EGAF50000330513 fastq.gz 144.4 MB
EGAF50000330514 fastq.gz 32.0 MB
EGAF50000330515 fastq.gz 111.3 MB
EGAF50000330516 gz 123.2 MB
EGAF50000330517 fastq.gz 35.1 MB
EGAF50000330518 fastq.gz 146.5 MB
EGAF50000330519 fastq.gz 161.2 MB
EGAF50000330520 fastq.gz 36.0 MB
EGAF50000330521 fastq.gz 150.8 MB
EGAF50000330522 fastq.gz 167.9 MB
EGAF50000330523 fastq.gz 37.1 MB
EGAF50000330524 fastq.gz 128.9 MB
EGAF50000330525 fastq.gz 147.7 MB
EGAF50000330526 fastq.gz 171.2 MB
EGAF50000330527 fastq.gz 48.9 MB
EGAF50000330528 fastq.gz 187.7 MB
EGAF50000330529 fastq.gz 150.0 MB
EGAF50000330530 fastq.gz 42.5 MB
EGAF50000330531 fastq.gz 165.6 MB
EGAF50000330532 fastq.gz 138.0 MB
EGAF50000330533 fastq.gz 38.6 MB
EGAF50000330534 fastq.gz 156.6 MB
EGAF50000330535 fastq.gz 145.6 MB
EGAF50000330536 fastq.gz 42.9 MB
EGAF50000330537 fastq.gz 158.8 MB
EGAF50000330538 fastq.gz 149.9 MB
EGAF50000330539 fastq.gz 44.0 MB
EGAF50000330540 fastq.gz 164.8 MB
EGAF50000330541 fastq.gz 129.1 MB
EGAF50000330542 fastq.gz 37.4 MB
EGAF50000330543 fastq.gz 142.0 MB
EGAF50000330544 fastq.gz 155.1 MB
EGAF50000330545 fastq.gz 45.7 MB
EGAF50000330546 fastq.gz 168.1 MB
EGAF50000330547 fastq.gz 128.4 MB
EGAF50000330548 fastq.gz 37.5 MB
EGAF50000330549 fastq.gz 141.9 MB
EGAF50000330550 fastq.gz 46.7 MB
EGAF50000330551 fastq.gz 163.9 MB
EGAF50000330552 fastq.gz 181.7 MB
EGAF50000330553 fastq.gz 138.8 MB
EGAF50000330554 fastq.gz 33.4 MB
EGAF50000330555 fastq.gz 153.0 MB
EGAF50000330556 fastq.gz 120.4 MB
EGAF50000330557 fastq.gz 32.8 MB
EGAF50000330558 fastq.gz 124.8 MB
EGAF50000330559 fastq.gz 149.4 MB
EGAF50000330560 fastq.gz 43.0 MB
EGAF50000330561 fastq.gz 156.3 MB
EGAF50000330562 fastq.gz 122.6 MB
EGAF50000330563 fastq.gz 34.1 MB
EGAF50000330564 fastq.gz 125.8 MB
EGAF50000330565 fastq.gz 163.9 MB
EGAF50000330566 fastq.gz 45.9 MB
EGAF50000330567 fastq.gz 187.4 MB
EGAF50000330568 fastq.gz 154.3 MB
EGAF50000330569 fastq.gz 43.4 MB
EGAF50000330570 fastq.gz 166.3 MB
EGAF50000330571 fastq.gz 143.0 MB
EGAF50000330572 fastq.gz 41.5 MB
EGAF50000330573 fastq.gz 161.9 MB
EGAF50000330574 fastq.gz 175.9 MB
EGAF50000330575 fastq.gz 49.0 MB
EGAF50000330576 fastq.gz 188.4 MB
EGAF50000330577 fastq.gz 150.8 MB
EGAF50000330578 fastq.gz 42.8 MB
EGAF50000330579 fastq.gz 157.8 MB
EGAF50000330580 fastq.gz 150.4 MB
EGAF50000330581 fastq.gz 42.7 MB
EGAF50000330582 fastq.gz 170.0 MB
EGAF50000330583 fastq.gz 155.6 MB
EGAF50000330584 fastq.gz 44.5 MB
EGAF50000330585 fastq.gz 167.8 MB
EGAF50000330586 fastq.gz 155.1 MB
EGAF50000330587 fastq.gz 46.6 MB
EGAF50000330588 fastq.gz 173.2 MB
EGAF50000330589 fastq.gz 135.1 MB
EGAF50000330590 fastq.gz 32.1 MB
EGAF50000330591 fastq.gz 149.4 MB
EGAF50000330592 fastq.gz 121.4 MB
EGAF50000330593 fastq.gz 33.6 MB
EGAF50000330594 fastq.gz 127.6 MB
EGAF50000330595 fastq.gz 192.6 MB
EGAF50000330596 fastq.gz 54.4 MB
EGAF50000330597 fastq.gz 201.7 MB
EGAF50000330598 fastq.gz 133.2 MB
EGAF50000330599 fastq.gz 36.9 MB
EGAF50000330600 fastq.gz 142.2 MB
EGAF50000330601 fastq.gz 145.2 MB
EGAF50000330602 fastq.gz 35.2 MB
EGAF50000330603 fastq.gz 162.0 MB
EGAF50000330604 fastq.gz 125.8 MB
EGAF50000330605 fastq.gz 36.5 MB
EGAF50000330606 fastq.gz 140.4 MB
EGAF50000330607 fastq.gz 167.5 MB
EGAF50000330608 fastq.gz 49.0 MB
EGAF50000330609 fastq.gz 190.8 MB
EGAF50000330610 fastq.gz 200.0 MB
EGAF50000330611 fastq.gz 57.0 MB
EGAF50000330612 fastq.gz 214.9 MB
EGAF50000330613 fastq.gz 125.7 MB
EGAF50000330614 fastq.gz 35.8 MB
EGAF50000330615 fastq.gz 139.7 MB
EGAF50000330616 fastq.gz 138.5 MB
EGAF50000330617 fastq.gz 39.2 MB
EGAF50000330618 fastq.gz 148.1 MB
EGAF50000330619 fastq.gz 174.0 MB
EGAF50000330620 fastq.gz 51.3 MB
EGAF50000330621 fastq.gz 190.7 MB
EGAF50000330622 fastq.gz 137.0 MB
EGAF50000330623 fastq.gz 32.5 MB
EGAF50000330624 fastq.gz 148.1 MB
EGAF50000330625 fastq.gz 137.9 MB
EGAF50000330626 fastq.gz 39.5 MB
EGAF50000330627 fastq.gz 149.7 MB
EGAF50000330628 fastq.gz 130.8 MB
EGAF50000330629 fastq.gz 36.4 MB
EGAF50000330630 fastq.gz 139.4 MB
EGAF50000330631 fastq.gz 142.3 MB
EGAF50000330632 fastq.gz 40.7 MB
EGAF50000330633 fastq.gz 158.6 MB
EGAF50000330634 fastq.gz 142.1 MB
EGAF50000330635 fastq.gz 42.6 MB
EGAF50000330636 fastq.gz 157.0 MB
EGAF50000330637 fastq.gz 118.4 MB
EGAF50000330638 fastq.gz 33.9 MB
EGAF50000330639 fastq.gz 133.3 MB
EGAF50000330640 fastq.gz 146.5 MB
EGAF50000330641 fastq.gz 34.9 MB
EGAF50000330642 fastq.gz 159.9 MB
EGAF50000330643 fastq.gz 162.2 MB
EGAF50000330644 fastq.gz 39.0 MB
EGAF50000330645 fastq.gz 180.1 MB
EGAF50000330646 fastq.gz 96.7 MB
EGAF50000330647 fastq.gz 27.6 MB
EGAF50000330648 fastq.gz 101.8 MB
EGAF50000330649 fastq.gz 138.3 MB
EGAF50000330650 fastq.gz 33.2 MB
EGAF50000330651 fastq.gz 153.7 MB
EGAF50000330652 fastq.gz 178.5 MB
EGAF50000330653 fastq.gz 51.5 MB
EGAF50000330654 fastq.gz 191.8 MB
EGAF50000330655 fastq.gz 117.9 MB
EGAF50000330656 fastq.gz 33.6 MB
EGAF50000330657 fastq.gz 126.0 MB
EGAF50000330658 fastq.gz 171.2 MB
EGAF50000330659 fastq.gz 48.8 MB
EGAF50000330660 fastq.gz 188.9 MB
EGAF50000330661 fastq.gz 127.8 MB
EGAF50000330662 fastq.gz 36.9 MB
EGAF50000330663 fastq.gz 145.6 MB
EGAF50000330664 fastq.gz 178.4 MB
EGAF50000330665 fastq.gz 50.2 MB
EGAF50000330666 fastq.gz 200.2 MB
EGAF50000330667 fastq.gz 163.4 MB
EGAF50000330668 fastq.gz 48.4 MB
EGAF50000330669 fastq.gz 183.5 MB
EGAF50000330670 fastq.gz 77.9 MB
EGAF50000330671 fastq.gz 23.5 MB
EGAF50000330672 fastq.gz 83.3 MB
EGAF50000330673 fastq.gz 159.7 MB
EGAF50000330674 fastq.gz 45.0 MB
EGAF50000330675 fastq.gz 173.1 MB
EGAF50000330676 fastq.gz 151.6 MB
EGAF50000330677 fastq.gz 45.2 MB
EGAF50000330678 fastq.gz 166.0 MB
EGAF50000330679 fastq.gz 151.2 MB
EGAF50000330680 fastq.gz 42.7 MB
EGAF50000330681 fastq.gz 164.7 MB
EGAF50000330682 fastq.gz 151.9 MB
EGAF50000330683 fastq.gz 42.9 MB
EGAF50000330684 fastq.gz 166.4 MB
EGAF50000330685 fastq.gz 147.2 MB
EGAF50000330686 fastq.gz 43.0 MB
EGAF50000330687 fastq.gz 161.8 MB
EGAF50000330688 fastq.gz 139.1 MB
EGAF50000330689 fastq.gz 40.0 MB
EGAF50000330690 fastq.gz 156.5 MB
EGAF50000330691 fastq.gz 150.5 MB
EGAF50000330692 fastq.gz 35.9 MB
EGAF50000330693 fastq.gz 164.5 MB
EGAF50000330694 fastq.gz 162.3 MB
EGAF50000330695 fastq.gz 39.4 MB
EGAF50000330696 fastq.gz 178.3 MB
EGAF50000330697 fastq.gz 118.2 MB
EGAF50000330698 fastq.gz 28.3 MB
EGAF50000330699 fastq.gz 130.3 MB
EGAF50000330700 fastq.gz 157.7 MB
EGAF50000330701 fastq.gz 45.5 MB
EGAF50000330702 fastq.gz 165.0 MB
EGAF50000330703 fastq.gz 128.3 MB
EGAF50000330704 fastq.gz 30.4 MB
EGAF50000330705 fastq.gz 138.4 MB
EGAF50000330706 fastq.gz 137.3 MB
EGAF50000330707 fastq.gz 38.6 MB
EGAF50000330708 fastq.gz 148.7 MB
EGAF50000330709 fastq.gz 161.7 MB
EGAF50000330710 fastq.gz 48.6 MB
EGAF50000330711 fastq.gz 177.7 MB
EGAF50000330712 fastq.gz 170.5 MB
EGAF50000330713 fastq.gz 48.3 MB
EGAF50000330714 fastq.gz 186.3 MB
EGAF50000330715 fastq.gz 156.3 MB
EGAF50000330716 fastq.gz 37.4 MB
EGAF50000330717 fastq.gz 173.8 MB
EGAF50000330718 fastq.gz 131.7 MB
EGAF50000330719 fastq.gz 35.7 MB
EGAF50000330720 fastq.gz 137.7 MB
EGAF50000330721 fastq.gz 141.1 MB
EGAF50000330722 fastq.gz 38.5 MB
EGAF50000330723 fastq.gz 151.7 MB
EGAF50000330724 fastq.gz 139.4 MB
EGAF50000330725 fastq.gz 38.8 MB
EGAF50000330726 fastq.gz 157.3 MB
EGAF50000330727 fastq.gz 135.1 MB
EGAF50000330728 fastq.gz 36.1 MB
EGAF50000330729 fastq.gz 139.6 MB
EGAF50000330730 fastq.gz 149.0 MB
EGAF50000330731 fastq.gz 42.9 MB
EGAF50000330732 fastq.gz 155.5 MB
EGAF50000330733 fastq.gz 138.5 MB
EGAF50000330734 fastq.gz 33.1 MB
EGAF50000330735 fastq.gz 151.3 MB
EGAF50000330736 fastq.gz 112.4 MB
EGAF50000330737 fastq.gz 26.9 MB
EGAF50000330738 fastq.gz 122.4 MB
EGAF50000330739 fastq.gz 162.3 MB
EGAF50000330740 fastq.gz 47.9 MB
EGAF50000330741 fastq.gz 182.3 MB
EGAF50000330742 fastq.gz 129.9 MB
EGAF50000330743 fastq.gz 37.8 MB
EGAF50000330744 fastq.gz 142.4 MB
EGAF50000330745 fastq.gz 124.2 MB
EGAF50000330746 fastq.gz 36.5 MB
EGAF50000330747 fastq.gz 136.1 MB
EGAF50000330748 fastq.gz 38.8 MB
EGAF50000330749 fastq.gz 137.7 MB
EGAF50000330750 fastq.gz 146.4 MB
EGAF50000330751 fastq.gz 145.8 MB
EGAF50000330752 fastq.gz 34.6 MB
EGAF50000330753 fastq.gz 160.7 MB
EGAF50000330754 fastq.gz 49.0 MB
EGAF50000330755 fastq.gz 187.1 MB
EGAF50000330756 fastq.gz 170.7 MB
EGAF50000330757 fastq.gz 179.8 MB
EGAF50000330758 fastq.gz 50.6 MB
EGAF50000330759 fastq.gz 193.5 MB
261 Files (29.6 GB)