About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Single cell RNAseq and TCRseq data from tumor and blood samples from 4 patients with muscle invasive bladder cancer

For this dataset we performed single cell RNAseq paired with single cell TCR-seq on tumor and blood samples from 4 patients. This dataset contains 4 tumor samples as well as 4 blood samples. Each sample is made up of 2 sets of paired fastq files. The first pair contains reads corresponding to RNA transcripts (_Transcripts in file name), while the second pair contain reads corresponding to TCRs (_VDJ in file name). Sequenced on the Illumina NovaSeq6000 platform in a paired-end run using an SP flow cell (v1.5, 300 cycles).

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000012
version: 2021-02-23

research specific restrictions

This data use modifier indicates that use is limited to studies of a certain research type.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DAA_Kjaer A., Kristjánsdóttir N., Juul R. I. et al. singleCell sequencing

see URL

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000938 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000347287 fastq.gz 1.2 GB
EGAF50000347288 fastq.gz 3.5 GB
EGAF50000347293 fastq.gz 1.2 GB
EGAF50000347296 fastq.gz 1.2 GB
EGAF50000347297 fastq.gz 2.6 GB
EGAF50000347298 fastq.gz 4.5 GB
EGAF50000347299 fastq.gz 1.4 GB
EGAF50000347300 fastq.gz 4.2 GB
EGAF50000347301 fastq.gz 2.8 GB
EGAF50000347302 fastq.gz 1.5 GB
EGAF50000347303 fastq.gz 1.1 GB
EGAF50000347304 fastq.gz 12.9 GB
EGAF50000347305 fastq.gz 12.8 GB
EGAF50000347306 fastq.gz 2.4 GB
EGAF50000347307 fastq.gz 5.3 GB
EGAF50000347308 fastq.gz 6.2 GB
EGAF50000347309 fastq.gz 11.0 GB
EGAF50000347310 fastq.gz 997.7 MB
EGAF50000347311 fastq.gz 10.7 GB
EGAF50000347312 fastq.gz 1.3 GB
EGAF50000347313 fastq.gz 2.3 GB
EGAF50000347314 fastq.gz 4.5 GB
EGAF50000347315 fastq.gz 2.8 GB
EGAF50000347316 fastq.gz 2.6 GB
EGAF50000347317 fastq.gz 13.5 GB
EGAF50000347318 fastq.gz 5.2 GB
EGAF50000347319 fastq.gz 5.1 GB
EGAF50000347320 fastq.gz 15.3 GB
EGAF50000347321 fastq.gz 13.0 GB
EGAF50000347326 fastq.gz 11.1 GB
EGAF50000347464 fastq.gz 5.4 GB
EGAF50000347485 fastq.gz 2.7 GB
32 Files (172.2 GB)