About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole Exome Sequencing of Human Gastro-esophageal Cancer PDXs

The dataset includes 51 whole exome sequencing datasets generated using Illumina paired-end sequencing technology. These data derive from 26 patient-derived xenograft (PDX) tumors and their matched normal tissues, which consist of either normal gastric mucosa or blood samples. In one case (GTR0607), the matched normal tissue data are unavailable. As a result, the dataset comprises 102 FASTQ files, providing raw sequencing reads for comprehensive genomic analysis.

Request Access

Policy EGFR TARGETING IN GASTR-ESOPHAGEAL CANCER

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. Please contact the following email addresses: ricerca-medsanluigi@unito.it, claudio.isella@unito.it, silvia.giordano@unito.it for further information. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000966 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000350411 fastq.gz 3.6 GB
EGAF50000350412 fastq.gz 4.2 GB
EGAF50000350413 fastq.gz 2.5 GB
EGAF50000350414 fastq.gz 3.7 GB
EGAF50000350415 fastq.gz 3.8 GB
EGAF50000350416 fastq.gz 1.9 GB
EGAF50000350417 fastq.gz 2.9 GB
EGAF50000350418 fastq.gz 2.8 GB
EGAF50000350419 fastq.gz 3.0 GB
EGAF50000350420 fastq.gz 3.4 GB
EGAF50000350421 fastq.gz 2.9 GB
EGAF50000350422 fastq.gz 3.1 GB
EGAF50000350423 fastq.gz 3.4 GB
EGAF50000350424 fastq.gz 3.3 GB
EGAF50000350425 fastq.gz 4.5 GB
EGAF50000350426 fastq.gz 4.8 GB
EGAF50000350427 fastq.gz 4.5 GB
EGAF50000350428 fastq.gz 4.1 GB
EGAF50000350429 fastq.gz 4.4 GB
EGAF50000350430 fastq.gz 3.9 GB
EGAF50000350431 fastq.gz 3.0 GB
EGAF50000350432 fastq.gz 4.6 GB
EGAF50000350433 fastq.gz 2.5 GB
EGAF50000350434 fastq.gz 4.2 GB
EGAF50000350435 fastq.gz 2.8 GB
EGAF50000350436 fastq.gz 4.1 GB
EGAF50000350437 fastq.gz 3.8 GB
EGAF50000350438 fastq.gz 4.0 GB
EGAF50000350439 fastq.gz 4.7 GB
EGAF50000350440 fastq.gz 4.1 GB
EGAF50000350441 fastq.gz 2.5 GB
EGAF50000350442 fastq.gz 3.9 GB
EGAF50000350443 fastq.gz 3.3 GB
EGAF50000350444 fastq.gz 2.9 GB
EGAF50000350445 fastq.gz 3.1 GB
EGAF50000350446 fastq.gz 3.8 GB
EGAF50000350447 fastq.gz 3.4 GB
EGAF50000350448 fastq.gz 3.1 GB
EGAF50000350449 fastq.gz 3.2 GB
EGAF50000350450 fastq.gz 3.3 GB
EGAF50000350451 fastq.gz 2.9 GB
EGAF50000350452 fastq.gz 3.3 GB
EGAF50000350453 fastq.gz 3.3 GB
EGAF50000350454 fastq.gz 1.9 GB
EGAF50000350455 fastq.gz 2.1 GB
EGAF50000350456 fastq.gz 2.6 GB
EGAF50000350457 fastq.gz 2.7 GB
EGAF50000350458 fastq.gz 2.7 GB
EGAF50000350459 fastq.gz 2.7 GB
EGAF50000350460 fastq.gz 4.0 GB
EGAF50000350461 fastq.gz 4.2 GB
EGAF50000350462 fastq.gz 4.5 GB
EGAF50000350463 fastq.gz 4.1 GB
EGAF50000350464 fastq.gz 4.3 GB
EGAF50000350465 fastq.gz 5.4 GB
EGAF50000350466 fastq.gz 5.7 GB
EGAF50000350467 fastq.gz 3.9 GB
EGAF50000350468 fastq.gz 2.1 GB
EGAF50000350469 fastq.gz 2.8 GB
EGAF50000350470 fastq.gz 2.6 GB
EGAF50000350471 fastq.gz 2.2 GB
EGAF50000350472 fastq.gz 2.2 GB
EGAF50000350473 fastq.gz 2.8 GB
EGAF50000350474 fastq.gz 2.8 GB
EGAF50000350475 fastq.gz 2.8 GB
EGAF50000350476 fastq.gz 2.9 GB
EGAF50000350477 fastq.gz 3.1 GB
EGAF50000350478 fastq.gz 3.2 GB
EGAF50000350479 fastq.gz 3.6 GB
EGAF50000350480 fastq.gz 2.5 GB
EGAF50000350481 fastq.gz 2.6 GB
EGAF50000350482 fastq.gz 4.8 GB
EGAF50000350483 fastq.gz 4.3 GB
EGAF50000350484 fastq.gz 4.4 GB
EGAF50000350485 fastq.gz 3.6 GB
EGAF50000350486 fastq.gz 3.8 GB
EGAF50000350487 fastq.gz 3.9 GB
EGAF50000350488 fastq.gz 4.0 GB
EGAF50000350489 fastq.gz 2.6 GB
EGAF50000350490 fastq.gz 2.8 GB
EGAF50000350491 fastq.gz 2.8 GB
EGAF50000350492 fastq.gz 3.0 GB
EGAF50000350493 fastq.gz 2.6 GB
EGAF50000350494 fastq.gz 2.9 GB
EGAF50000350495 fastq.gz 3.0 GB
EGAF50000350496 fastq.gz 2.6 GB
EGAF50000350497 fastq.gz 2.6 GB
EGAF50000350498 fastq.gz 2.2 GB
EGAF50000350499 fastq.gz 2.2 GB
EGAF50000350500 fastq.gz 4.3 GB
EGAF50000350501 fastq.gz 3.4 GB
EGAF50000350502 fastq.gz 4.5 GB
EGAF50000350503 fastq.gz 4.5 GB
EGAF50000350504 fastq.gz 4.8 GB
EGAF50000350505 fastq.gz 3.7 GB
EGAF50000350506 fastq.gz 2.2 GB
EGAF50000350507 fastq.gz 2.3 GB
EGAF50000350508 fastq.gz 2.7 GB
EGAF50000350509 fastq.gz 2.6 GB
EGAF50000350510 fastq.gz 2.7 GB
EGAF50000350511 fastq.gz 2.4 GB
EGAF50000350512 fastq.gz 4.3 GB
102 Files (341.8 GB)