About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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CLUSTER Consortium RNAseq CD8 Dataset of pre-methotrexate UK JIA patients cohort

This is the RNAseq CD8 dataset (paired FASTQ files, n = 85 paired files) generated from pre-methotrexate treatment JIA patients cohort samples. CD8 cells were sorted from isolated total PBMC by cell sorter (BD FACSAriaTM III, BD Biosciences). Clinical metadata is also included in this dataset. Samples were sequenced on the NovaSeq6000 instrument (Illumina, San Diego, US) at 300pM, using a 100bp paired read run with corresponding 8bp dual sample index and 5bp or 8bp unique molecular index reads. Run data were demultiplexed and converted to FASTQ files using Illumina’s BCL Convert Software v3.75.

Request Access

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

CLUSTER Consortium Data Access Policy

Access to CLUSTER datasets is controlled. Please only click the "Request Access" button on the EGA website after a Data Access Agreement is sent to the CLUSTER Consortium. The DAA form can be found through the CLUSTER Consortium Data Access Policy URL link. Alternatively, please go to: https://zenodo.org/records/17856897 to find the form.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000995 RNASeq
  • Updated with PMID Updated the library pairing type from single to paired
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000368169 fastq.gz 728.4 MB
EGAF50000368172 fastq.gz 2.2 GB
EGAF50000368173 fastq.gz 2.1 GB
EGAF50000368188 fastq.gz 4.6 GB
EGAF50000368189 fastq.gz 4.8 GB
EGAF50000368190 fastq.gz 703.2 MB
EGAF50000368201 fastq.gz 5.8 GB
EGAF50000368202 fastq.gz 6.0 GB
EGAF50000368209 fastq.gz 4.6 GB
EGAF50000368210 fastq.gz 4.8 GB
EGAF50000368221 fastq.gz 1.5 GB
EGAF50000368222 fastq.gz 1.6 GB
EGAF50000368228 fastq.gz 1.5 GB
EGAF50000368230 fastq.gz 1.6 GB
EGAF50000368239 fastq.gz 813.7 MB
EGAF50000368241 fastq.gz 836.6 MB
EGAF50000368253 fastq.gz 2.8 GB
EGAF50000368254 fastq.gz 2.8 GB
EGAF50000368265 fastq.gz 2.7 GB
EGAF50000368266 fastq.gz 2.8 GB
EGAF50000368275 fastq.gz 1.9 GB
EGAF50000368276 fastq.gz 2.0 GB
EGAF50000368281 fastq.gz 2.9 GB
EGAF50000368282 fastq.gz 3.0 GB
EGAF50000368287 fastq.gz 2.1 GB
EGAF50000368289 fastq.gz 2.1 GB
EGAF50000368295 fastq.gz 624.1 MB
EGAF50000368296 fastq.gz 640.2 MB
EGAF50000368303 fastq.gz 1.9 GB
EGAF50000368304 fastq.gz 1.9 GB
EGAF50000368311 fastq.gz 3.2 GB
EGAF50000368312 fastq.gz 3.3 GB
EGAF50000368318 fastq.gz 1.6 GB
EGAF50000368320 fastq.gz 1.7 GB
EGAF50000368326 fastq.gz 882.3 MB
EGAF50000368328 fastq.gz 904.2 MB
EGAF50000368337 fastq.gz 2.0 GB
EGAF50000368338 fastq.gz 2.0 GB
EGAF50000368347 fastq.gz 2.2 GB
EGAF50000368348 fastq.gz 2.3 GB
EGAF50000368357 fastq.gz 1.6 GB
EGAF50000368359 fastq.gz 1.7 GB
EGAF50000368367 fastq.gz 3.5 GB
EGAF50000368368 fastq.gz 3.6 GB
EGAF50000368391 fastq.gz 1.7 GB
EGAF50000368392 fastq.gz 1.8 GB
EGAF50000368401 fastq.gz 505.3 MB
EGAF50000368402 fastq.gz 512.3 MB
EGAF50000368411 fastq.gz 1.6 GB
EGAF50000368412 fastq.gz 1.6 GB
EGAF50000368418 fastq.gz 674.1 MB
EGAF50000368420 fastq.gz 691.7 MB
EGAF50000368429 fastq.gz 2.1 GB
EGAF50000368430 fastq.gz 2.1 GB
EGAF50000368439 fastq.gz 2.6 GB
EGAF50000368440 fastq.gz 2.7 GB
EGAF50000368446 fastq.gz 1.2 GB
EGAF50000368447 fastq.gz 1.3 GB
EGAF50000368454 fastq.gz 1.2 GB
EGAF50000368456 fastq.gz 1.2 GB
EGAF50000368467 fastq.gz 1.2 GB
EGAF50000368468 fastq.gz 1.3 GB
EGAF50000368475 fastq.gz 815.1 MB
EGAF50000368476 fastq.gz 838.0 MB
EGAF50000368483 fastq.gz 1.9 GB
EGAF50000368484 fastq.gz 1.9 GB
EGAF50000368499 fastq.gz 2.5 GB
EGAF50000368500 fastq.gz 2.6 GB
EGAF50000368507 fastq.gz 1.8 GB
EGAF50000368508 fastq.gz 1.8 GB
EGAF50000368517 fastq.gz 2.2 GB
EGAF50000368518 fastq.gz 2.3 GB
EGAF50000368525 fastq.gz 2.3 GB
EGAF50000368526 fastq.gz 2.3 GB
EGAF50000368533 fastq.gz 2.2 GB
EGAF50000368535 fastq.gz 2.3 GB
EGAF50000368543 fastq.gz 1.3 GB
EGAF50000368544 fastq.gz 1.3 GB
EGAF50000368553 fastq.gz 2.7 GB
EGAF50000368554 fastq.gz 2.7 GB
EGAF50000368561 fastq.gz 2.4 GB
EGAF50000368562 fastq.gz 2.5 GB
EGAF50000368571 fastq.gz 2.4 GB
EGAF50000368572 fastq.gz 2.5 GB
EGAF50000368579 fastq.gz 2.2 GB
EGAF50000368580 fastq.gz 2.3 GB
EGAF50000368589 fastq.gz 2.7 GB
EGAF50000368590 fastq.gz 2.7 GB
EGAF50000368602 fastq.gz 1.1 GB
EGAF50000368604 fastq.gz 1.2 GB
EGAF50000368613 fastq.gz 2.1 GB
EGAF50000368615 fastq.gz 2.2 GB
EGAF50000368623 fastq.gz 1.8 GB
EGAF50000368624 fastq.gz 1.8 GB
EGAF50000368633 fastq.gz 1.7 GB
EGAF50000368634 fastq.gz 1.7 GB
EGAF50000368641 fastq.gz 2.4 GB
EGAF50000368642 fastq.gz 2.5 GB
EGAF50000368651 fastq.gz 2.0 GB
EGAF50000368652 fastq.gz 2.0 GB
EGAF50000368660 fastq.gz 1.8 GB
EGAF50000368662 fastq.gz 1.9 GB
EGAF50000368671 fastq.gz 1.7 GB
EGAF50000368673 fastq.gz 1.8 GB
EGAF50000368681 fastq.gz 2.0 GB
EGAF50000368682 fastq.gz 2.0 GB
EGAF50000368691 fastq.gz 2.0 GB
EGAF50000368692 fastq.gz 2.0 GB
EGAF50000368701 fastq.gz 3.0 GB
EGAF50000368702 fastq.gz 3.1 GB
EGAF50000368708 fastq.gz 1.3 GB
EGAF50000368710 fastq.gz 1.3 GB
EGAF50000368719 fastq.gz 2.4 GB
EGAF50000368720 fastq.gz 2.4 GB
EGAF50000368729 fastq.gz 2.3 GB
EGAF50000368730 fastq.gz 2.3 GB
EGAF50000368739 fastq.gz 3.0 GB
EGAF50000368740 fastq.gz 3.0 GB
EGAF50000368749 fastq.gz 1.6 GB
EGAF50000368750 fastq.gz 1.6 GB
EGAF50000368757 fastq.gz 1.9 GB
EGAF50000368760 fastq.gz 2.0 GB
EGAF50000368767 fastq.gz 2.9 GB
EGAF50000368768 fastq.gz 2.9 GB
EGAF50000368777 fastq.gz 2.2 GB
EGAF50000368781 fastq.gz 2.3 GB
EGAF50000368787 fastq.gz 1.0 GB
EGAF50000368788 fastq.gz 1.0 GB
EGAF50000368796 fastq.gz 1.0 GB
EGAF50000368797 fastq.gz 1.0 GB
EGAF50000368806 fastq.gz 2.5 GB
EGAF50000368807 fastq.gz 2.5 GB
EGAF50000368816 fastq.gz 2.5 GB
EGAF50000368817 fastq.gz 2.6 GB
EGAF50000368823 fastq.gz 2.7 GB
EGAF50000368825 fastq.gz 2.8 GB
EGAF50000368829 fastq.gz 2.6 GB
EGAF50000368830 fastq.gz 2.6 GB
EGAF50000368839 fastq.gz 1.8 GB
EGAF50000368840 fastq.gz 1.8 GB
EGAF50000368849 fastq.gz 1.9 GB
EGAF50000368850 fastq.gz 2.0 GB
EGAF50000368855 fastq.gz 1.7 GB
EGAF50000368856 fastq.gz 1.7 GB
EGAF50000368865 fastq.gz 3.4 GB
EGAF50000368866 fastq.gz 3.4 GB
EGAF50000368877 fastq.gz 1.7 GB
EGAF50000368878 fastq.gz 1.7 GB
EGAF50000368886 fastq.gz 3.0 GB
EGAF50000368890 fastq.gz 3.1 GB
EGAF50000368897 fastq.gz 1.7 GB
EGAF50000368898 fastq.gz 1.7 GB
EGAF50000368906 fastq.gz 1.6 GB
EGAF50000368909 fastq.gz 1.6 GB
EGAF50000368917 fastq.gz 1.9 GB
EGAF50000368918 fastq.gz 1.9 GB
EGAF50000368927 fastq.gz 1.7 GB
EGAF50000368929 fastq.gz 1.7 GB
EGAF50000368935 fastq.gz 1.5 GB
EGAF50000368938 fastq.gz 1.5 GB
EGAF50000368947 fastq.gz 1.8 GB
EGAF50000368949 fastq.gz 1.8 GB
EGAF50000368957 fastq.gz 1.8 GB
EGAF50000368959 fastq.gz 1.8 GB
EGAF50000368966 fastq.gz 1.7 GB
EGAF50000368967 fastq.gz 1.8 GB
EGAF50000368980 fastq.gz 1.4 GB
EGAF50000368981 fastq.gz 1.4 GB
EGAF50000368993 fastq.gz 2.6 GB
EGAF50000368994 fastq.gz 2.6 GB
EGAF50000369001 xlsx 48.2 kB
171 Files (353.8 GB)