About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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CLUSTER Consortium RNAseq PBMC Dataset of pre-methotrexate UK JIA patients cohort

This is the RNAseq PBMC dataset (paired FASTQ files, n = 82 paired files) generated from pre-methotrexate treatment JIA patients cohort samples. Total PBMC were isolated from pre-treated blood of JIA patients and clinical metadata is also included in this dataset. Samples were sequenced on the NovaSeq6000 instrument (Illumina, San Diego, US) at 300pM, using a 100bp paired read run with corresponding 8bp dual sample index and 5bp or 8bp unique molecular index reads. Run data were demultiplexed and converted to FASTQ files using Illumina’s BCL Convert Software v3.75.

Request Access

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

CLUSTER Consortium Data Access Policy

Access to CLUSTER datasets is controlled. Please only click the "Request Access" button on the EGA website after a Data Access Agreement is sent to the CLUSTER Consortium. The DAA form can be found through the CLUSTER Consortium Data Access Policy URL link. Alternatively, please go to: https://zenodo.org/records/17856897 to find the form.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000995 RNASeq
  • Updated with PMID Updated the library pairing type from single to paired
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000368178 fastq.gz 1.9 GB
EGAF50000368179 fastq.gz 2.0 GB
EGAF50000368180 fastq.gz 2.3 GB
EGAF50000368181 fastq.gz 2.4 GB
EGAF50000368213 fastq.gz 3.0 GB
EGAF50000368214 fastq.gz 3.2 GB
EGAF50000368231 fastq.gz 2.1 GB
EGAF50000368232 fastq.gz 2.1 GB
EGAF50000368240 fastq.gz 870.3 MB
EGAF50000368242 fastq.gz 887.9 MB
EGAF50000368249 fastq.gz 2.1 GB
EGAF50000368250 fastq.gz 2.2 GB
EGAF50000368255 fastq.gz 2.3 GB
EGAF50000368256 fastq.gz 2.3 GB
EGAF50000368257 fastq.gz 2.7 GB
EGAF50000368258 fastq.gz 2.7 GB
EGAF50000368267 fastq.gz 2.5 GB
EGAF50000368269 fastq.gz 2.5 GB
EGAF50000368277 fastq.gz 2.3 GB
EGAF50000368280 fastq.gz 2.3 GB
EGAF50000368283 fastq.gz 687.6 MB
EGAF50000368284 fastq.gz 707.9 MB
EGAF50000368313 fastq.gz 3.0 GB
EGAF50000368314 fastq.gz 3.1 GB
EGAF50000368329 fastq.gz 1.7 GB
EGAF50000368330 fastq.gz 1.7 GB
EGAF50000368339 fastq.gz 1.1 GB
EGAF50000368340 fastq.gz 1.1 GB
EGAF50000368349 fastq.gz 2.6 GB
EGAF50000368350 fastq.gz 2.7 GB
EGAF50000368358 fastq.gz 1.5 GB
EGAF50000368360 fastq.gz 1.5 GB
EGAF50000368369 fastq.gz 1.8 GB
EGAF50000368370 fastq.gz 1.8 GB
EGAF50000368375 fastq.gz 1.5 GB
EGAF50000368376 fastq.gz 1.6 GB
EGAF50000368383 fastq.gz 597.6 MB
EGAF50000368384 fastq.gz 580.5 MB
EGAF50000368393 fastq.gz 1.1 GB
EGAF50000368394 fastq.gz 1.2 GB
EGAF50000368403 fastq.gz 725.6 MB
EGAF50000368404 fastq.gz 746.4 MB
EGAF50000368413 fastq.gz 792.9 MB
EGAF50000368414 fastq.gz 812.7 MB
EGAF50000368421 fastq.gz 660.5 MB
EGAF50000368422 fastq.gz 678.6 MB
EGAF50000368431 fastq.gz 1.6 GB
EGAF50000368432 fastq.gz 1.7 GB
EGAF50000368449 fastq.gz 3.5 GB
EGAF50000368450 fastq.gz 3.6 GB
EGAF50000368457 fastq.gz 2.5 GB
EGAF50000368458 fastq.gz 2.6 GB
EGAF50000368459 fastq.gz 2.4 GB
EGAF50000368460 fastq.gz 2.4 GB
EGAF50000368491 fastq.gz 3.6 GB
EGAF50000368492 fastq.gz 3.7 GB
EGAF50000368501 fastq.gz 2.0 GB
EGAF50000368502 fastq.gz 2.0 GB
EGAF50000368509 fastq.gz 1.9 GB
EGAF50000368510 fastq.gz 2.0 GB
EGAF50000368519 fastq.gz 2.0 GB
EGAF50000368520 fastq.gz 1.9 GB
EGAF50000368527 fastq.gz 1.9 GB
EGAF50000368528 fastq.gz 1.9 GB
EGAF50000368534 fastq.gz 1.2 GB
EGAF50000368536 fastq.gz 1.2 GB
EGAF50000368545 fastq.gz 2.4 GB
EGAF50000368546 fastq.gz 2.5 GB
EGAF50000368563 fastq.gz 2.1 GB
EGAF50000368564 fastq.gz 2.2 GB
EGAF50000368573 fastq.gz 2.4 GB
EGAF50000368574 fastq.gz 2.4 GB
EGAF50000368581 fastq.gz 2.4 GB
EGAF50000368582 fastq.gz 2.4 GB
EGAF50000368591 fastq.gz 2.5 GB
EGAF50000368593 fastq.gz 2.6 GB
EGAF50000368595 fastq.gz 2.0 GB
EGAF50000368596 fastq.gz 2.0 GB
EGAF50000368605 fastq.gz 2.3 GB
EGAF50000368606 fastq.gz 2.4 GB
EGAF50000368614 fastq.gz 970.2 MB
EGAF50000368616 fastq.gz 999.2 MB
EGAF50000368625 fastq.gz 2.3 GB
EGAF50000368626 fastq.gz 2.4 GB
EGAF50000368635 fastq.gz 2.8 GB
EGAF50000368636 fastq.gz 2.8 GB
EGAF50000368643 fastq.gz 2.7 GB
EGAF50000368644 fastq.gz 2.7 GB
EGAF50000368653 fastq.gz 2.0 GB
EGAF50000368654 fastq.gz 2.0 GB
EGAF50000368663 fastq.gz 2.0 GB
EGAF50000368664 fastq.gz 2.0 GB
EGAF50000368672 fastq.gz 1.5 GB
EGAF50000368674 fastq.gz 1.5 GB
EGAF50000368683 fastq.gz 2.0 GB
EGAF50000368684 fastq.gz 2.0 GB
EGAF50000368693 fastq.gz 3.2 GB
EGAF50000368694 fastq.gz 3.2 GB
EGAF50000368703 fastq.gz 1.7 GB
EGAF50000368704 fastq.gz 1.8 GB
EGAF50000368711 fastq.gz 2.4 GB
EGAF50000368712 fastq.gz 2.5 GB
EGAF50000368721 fastq.gz 1.4 GB
EGAF50000368722 fastq.gz 1.4 GB
EGAF50000368731 fastq.gz 2.4 GB
EGAF50000368732 fastq.gz 2.5 GB
EGAF50000368741 fastq.gz 3.3 GB
EGAF50000368742 fastq.gz 3.4 GB
EGAF50000368751 fastq.gz 2.5 GB
EGAF50000368752 fastq.gz 2.5 GB
EGAF50000368769 fastq.gz 2.1 GB
EGAF50000368770 fastq.gz 2.1 GB
EGAF50000368778 fastq.gz 1.3 GB
EGAF50000368780 fastq.gz 1.3 GB
EGAF50000368790 fastq.gz 3.0 GB
EGAF50000368791 fastq.gz 3.1 GB
EGAF50000368798 fastq.gz 2.5 GB
EGAF50000368799 fastq.gz 2.6 GB
EGAF50000368808 fastq.gz 2.3 GB
EGAF50000368809 fastq.gz 2.3 GB
EGAF50000368818 fastq.gz 2.5 GB
EGAF50000368819 fastq.gz 824.9 MB
EGAF50000368820 fastq.gz 849.7 MB
EGAF50000368821 fastq.gz 2.6 GB
EGAF50000368831 fastq.gz 2.7 GB
EGAF50000368832 fastq.gz 2.6 GB
EGAF50000368841 fastq.gz 2.1 GB
EGAF50000368842 fastq.gz 2.2 GB
EGAF50000368851 fastq.gz 2.1 GB
EGAF50000368852 fastq.gz 2.1 GB
EGAF50000368861 fastq.gz 1.9 GB
EGAF50000368862 fastq.gz 2.0 GB
EGAF50000368870 fastq.gz 1.7 GB
EGAF50000368872 fastq.gz 1.7 GB
EGAF50000368873 fastq.gz 1.7 GB
EGAF50000368874 fastq.gz 1.7 GB
EGAF50000368882 fastq.gz 1.7 GB
EGAF50000368884 fastq.gz 1.7 GB
EGAF50000368893 fastq.gz 1.6 GB
EGAF50000368894 fastq.gz 1.6 GB
EGAF50000368903 fastq.gz 1.7 GB
EGAF50000368904 fastq.gz 1.7 GB
EGAF50000368913 fastq.gz 1.5 GB
EGAF50000368914 fastq.gz 1.6 GB
EGAF50000368923 fastq.gz 1.6 GB
EGAF50000368924 fastq.gz 1.6 GB
EGAF50000368933 fastq.gz 1.8 GB
EGAF50000368934 fastq.gz 1.8 GB
EGAF50000368942 fastq.gz 1.9 GB
EGAF50000368943 fastq.gz 2.0 GB
EGAF50000368953 fastq.gz 1.7 GB
EGAF50000368954 fastq.gz 1.7 GB
EGAF50000368963 fastq.gz 2.1 GB
EGAF50000368965 fastq.gz 2.1 GB
EGAF50000368973 fastq.gz 1.7 GB
EGAF50000368974 fastq.gz 1.6 GB
EGAF50000368975 fastq.gz 1.8 GB
EGAF50000368976 fastq.gz 1.8 GB
EGAF50000368982 fastq.gz 1.8 GB
EGAF50000368983 fastq.gz 1.8 GB
EGAF50000368985 fastq.gz 1.6 GB
EGAF50000368986 fastq.gz 1.6 GB
EGAF50000368995 fastq.gz 1.9 GB
EGAF50000368996 fastq.gz 1.9 GB
EGAF50000369001 xlsx 48.2 kB
165 Files (328.3 GB)