About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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CLUSTER Consortium RNAseq CD14 Dataset of pre-methotrexate UK JIA patients cohort

This is the RNAseq CD14 dataset (paired FASTQ files, n = 80 paired files) generated from pre-methotrexate treatment JIA patients cohort samples. CD14 cells were sorted from isolated total PBMC by cell sorter (BD FACSAriaTM III, BD Biosciences). Clinical metadata is also included in this dataset. Samples were sequenced on the NovaSeq6000 instrument (Illumina, San Diego, US) at 300pM, using a 100bp paired read run with corresponding 8bp dual sample index and 5bp or 8bp unique molecular index reads. Run data were demultiplexed and converted to FASTQ files using Illumina’s BCL Convert Software v3.75.

Request Access

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

CLUSTER Consortium Data Access Policy

Access to CLUSTER datasets is controlled. Please only click the "Request Access" button on the EGA website after a Data Access Agreement is sent to the CLUSTER Consortium. The DAA form can be found through the CLUSTER Consortium Data Access Policy URL link. Alternatively, please go to: https://zenodo.org/records/17856897 to find the form.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000995 RNASeq
  • Updated with PMID Updated the library pairing type from single to paired
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000368174 fastq.gz 3.0 GB
EGAF50000368175 fastq.gz 3.1 GB
EGAF50000368182 fastq.gz 8.5 GB
EGAF50000368183 fastq.gz 8.2 GB
EGAF50000368191 fastq.gz 5.4 GB
EGAF50000368192 fastq.gz 5.6 GB
EGAF50000368195 fastq.gz 4.6 GB
EGAF50000368197 fastq.gz 4.8 GB
EGAF50000368203 fastq.gz 5.9 GB
EGAF50000368204 fastq.gz 6.2 GB
EGAF50000368211 fastq.gz 1.9 GB
EGAF50000368212 fastq.gz 2.0 GB
EGAF50000368215 fastq.gz 1.8 GB
EGAF50000368216 fastq.gz 1.8 GB
EGAF50000368223 fastq.gz 1.9 GB
EGAF50000368224 fastq.gz 1.9 GB
EGAF50000368233 fastq.gz 1.3 GB
EGAF50000368235 fastq.gz 1.3 GB
EGAF50000368243 fastq.gz 2.8 GB
EGAF50000368244 fastq.gz 2.8 GB
EGAF50000368259 fastq.gz 1.9 GB
EGAF50000368260 fastq.gz 2.0 GB
EGAF50000368268 fastq.gz 974.0 MB
EGAF50000368270 fastq.gz 996.9 MB
EGAF50000368288 fastq.gz 1.7 GB
EGAF50000368291 fastq.gz 1.7 GB
EGAF50000368297 fastq.gz 3.0 GB
EGAF50000368298 fastq.gz 3.1 GB
EGAF50000368305 fastq.gz 1.3 GB
EGAF50000368306 fastq.gz 1.3 GB
EGAF50000368315 fastq.gz 2.2 GB
EGAF50000368316 fastq.gz 2.2 GB
EGAF50000368321 fastq.gz 750.8 MB
EGAF50000368322 fastq.gz 774.0 MB
EGAF50000368331 fastq.gz 2.4 GB
EGAF50000368332 fastq.gz 2.4 GB
EGAF50000368341 fastq.gz 2.5 GB
EGAF50000368342 fastq.gz 2.5 GB
EGAF50000368361 fastq.gz 2.2 GB
EGAF50000368362 fastq.gz 2.3 GB
EGAF50000368371 fastq.gz 1.3 GB
EGAF50000368373 fastq.gz 1.4 GB
EGAF50000368377 fastq.gz 515.8 MB
EGAF50000368379 fastq.gz 528.5 MB
EGAF50000368385 fastq.gz 1.3 GB
EGAF50000368386 fastq.gz 1.4 GB
EGAF50000368395 fastq.gz 1.9 GB
EGAF50000368397 fastq.gz 2.0 GB
EGAF50000368405 fastq.gz 2.1 GB
EGAF50000368406 fastq.gz 2.2 GB
EGAF50000368423 fastq.gz 1.8 GB
EGAF50000368424 fastq.gz 1.8 GB
EGAF50000368433 fastq.gz 2.0 GB
EGAF50000368434 fastq.gz 2.1 GB
EGAF50000368441 fastq.gz 2.4 GB
EGAF50000368442 fastq.gz 2.4 GB
EGAF50000368451 fastq.gz 1.3 GB
EGAF50000368452 fastq.gz 1.4 GB
EGAF50000368461 fastq.gz 1.5 GB
EGAF50000368462 fastq.gz 1.5 GB
EGAF50000368469 fastq.gz 625.5 MB
EGAF50000368470 fastq.gz 639.6 MB
EGAF50000368477 fastq.gz 1.3 GB
EGAF50000368478 fastq.gz 1.3 GB
EGAF50000368485 fastq.gz 780.0 MB
EGAF50000368486 fastq.gz 797.4 MB
EGAF50000368493 fastq.gz 2.0 GB
EGAF50000368494 fastq.gz 2.0 GB
EGAF50000368503 fastq.gz 2.3 GB
EGAF50000368504 fastq.gz 2.3 GB
EGAF50000368511 fastq.gz 2.2 GB
EGAF50000368512 fastq.gz 2.3 GB
EGAF50000368521 fastq.gz 2.0 GB
EGAF50000368522 fastq.gz 2.0 GB
EGAF50000368537 fastq.gz 2.3 GB
EGAF50000368538 fastq.gz 2.3 GB
EGAF50000368547 fastq.gz 2.1 GB
EGAF50000368548 fastq.gz 2.1 GB
EGAF50000368555 fastq.gz 1.9 GB
EGAF50000368556 fastq.gz 1.9 GB
EGAF50000368565 fastq.gz 2.4 GB
EGAF50000368566 fastq.gz 2.5 GB
EGAF50000368583 fastq.gz 1.6 GB
EGAF50000368584 fastq.gz 1.7 GB
EGAF50000368597 fastq.gz 2.3 GB
EGAF50000368598 fastq.gz 2.4 GB
EGAF50000368607 fastq.gz 2.3 GB
EGAF50000368608 fastq.gz 2.4 GB
EGAF50000368617 fastq.gz 2.4 GB
EGAF50000368618 fastq.gz 2.5 GB
EGAF50000368627 fastq.gz 1.9 GB
EGAF50000368628 fastq.gz 1.9 GB
EGAF50000368637 fastq.gz 1.2 GB
EGAF50000368638 fastq.gz 1.2 GB
EGAF50000368645 fastq.gz 1.9 GB
EGAF50000368646 fastq.gz 1.9 GB
EGAF50000368655 fastq.gz 1.7 GB
EGAF50000368656 fastq.gz 1.8 GB
EGAF50000368665 fastq.gz 3.4 GB
EGAF50000368666 fastq.gz 3.5 GB
EGAF50000368675 fastq.gz 2.0 GB
EGAF50000368676 fastq.gz 2.1 GB
EGAF50000368685 fastq.gz 2.6 GB
EGAF50000368686 fastq.gz 2.6 GB
EGAF50000368695 fastq.gz 2.9 GB
EGAF50000368696 fastq.gz 3.0 GB
EGAF50000368713 fastq.gz 2.5 GB
EGAF50000368714 fastq.gz 2.6 GB
EGAF50000368723 fastq.gz 2.7 GB
EGAF50000368725 fastq.gz 2.7 GB
EGAF50000368733 fastq.gz 3.1 GB
EGAF50000368734 fastq.gz 3.0 GB
EGAF50000368743 fastq.gz 2.3 GB
EGAF50000368744 fastq.gz 2.3 GB
EGAF50000368754 fastq.gz 1.9 GB
EGAF50000368755 fastq.gz 2.0 GB
EGAF50000368761 fastq.gz 2.0 GB
EGAF50000368762 fastq.gz 2.0 GB
EGAF50000368771 fastq.gz 1.6 GB
EGAF50000368772 fastq.gz 1.7 GB
EGAF50000368779 fastq.gz 2.5 GB
EGAF50000368782 fastq.gz 1.0 GB
EGAF50000368784 fastq.gz 2.5 GB
EGAF50000368792 fastq.gz 980.6 MB
EGAF50000368800 fastq.gz 2.8 GB
EGAF50000368801 fastq.gz 2.9 GB
EGAF50000368810 fastq.gz 2.8 GB
EGAF50000368811 fastq.gz 2.9 GB
EGAF50000368833 fastq.gz 2.2 GB
EGAF50000368834 fastq.gz 2.1 GB
EGAF50000368843 fastq.gz 2.1 GB
EGAF50000368844 fastq.gz 2.2 GB
EGAF50000368857 fastq.gz 1.3 GB
EGAF50000368858 fastq.gz 1.4 GB
EGAF50000368867 fastq.gz 1.6 GB
EGAF50000368868 fastq.gz 1.6 GB
EGAF50000368879 fastq.gz 1.7 GB
EGAF50000368880 fastq.gz 1.7 GB
EGAF50000368887 fastq.gz 1.8 GB
EGAF50000368889 fastq.gz 1.9 GB
EGAF50000368899 fastq.gz 1.7 GB
EGAF50000368900 fastq.gz 1.7 GB
EGAF50000368908 fastq.gz 1.8 GB
EGAF50000368910 fastq.gz 1.9 GB
EGAF50000368919 fastq.gz 1.9 GB
EGAF50000368921 fastq.gz 2.0 GB
EGAF50000368928 fastq.gz 1.6 GB
EGAF50000368930 fastq.gz 1.6 GB
EGAF50000368940 fastq.gz 1.9 GB
EGAF50000368941 fastq.gz 1.8 GB
EGAF50000368948 fastq.gz 2.1 GB
EGAF50000368950 fastq.gz 2.1 GB
EGAF50000368958 fastq.gz 2.1 GB
EGAF50000368960 fastq.gz 2.1 GB
EGAF50000368969 fastq.gz 1.8 GB
EGAF50000368970 fastq.gz 1.8 GB
EGAF50000368987 fastq.gz 1.5 GB
EGAF50000368988 fastq.gz 1.5 GB
EGAF50000368998 fastq.gz 7.5 GB
EGAF50000368999 fastq.gz 7.4 GB
EGAF50000369001 xlsx 48.2 kB
161 Files (358.9 GB)