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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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CLUSTER Consortium RNAseq CD19 Dataset of pre-methotrexate UK JIA patients cohort

This is the RNAseq CD19 dataset (paired FASTQ files, n = 83 paired files) generated from pre-methotrexate treatment JIA patients cohort samples. CD19 cells were sorted from isolated total PBMC by cell sorter (BD FACSAriaTM III, BD Biosciences). Clinical metadata is also included in this dataset. Samples were sequenced on the NovaSeq6000 instrument (Illumina, San Diego, US) at 300pM, using a 100bp paired read run with corresponding 8bp dual sample index and 5bp or 8bp unique molecular index reads. Run data were demultiplexed and converted to FASTQ files using Illumina’s BCL Convert Software v3.75.

Request Access

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

CLUSTER Consortium Data Access Policy

Access to CLUSTER datasets is controlled. Please only click the "Request Access" button on the EGA website after a Data Access Agreement is sent to the CLUSTER Consortium. The DAA form can be found through the CLUSTER Consortium Data Access Policy URL link. Alternatively, please go to: https://zenodo.org/records/17856897 to find the form.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000995 RNASeq
  • Updated with PMID Updated the library pairing type from single to paired
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000368176 fastq.gz 2.2 GB
EGAF50000368177 fastq.gz 2.3 GB
EGAF50000368184 fastq.gz 4.9 GB
EGAF50000368185 fastq.gz 5.1 GB
EGAF50000368193 fastq.gz 5.8 GB
EGAF50000368194 fastq.gz 6.0 GB
EGAF50000368196 fastq.gz 4.2 GB
EGAF50000368198 fastq.gz 4.4 GB
EGAF50000368205 fastq.gz 5.6 GB
EGAF50000368206 fastq.gz 5.8 GB
EGAF50000368217 fastq.gz 1.6 GB
EGAF50000368218 fastq.gz 1.7 GB
EGAF50000368225 fastq.gz 2.1 GB
EGAF50000368226 fastq.gz 2.1 GB
EGAF50000368234 fastq.gz 610.2 MB
EGAF50000368236 fastq.gz 622.2 MB
EGAF50000368245 fastq.gz 2.2 GB
EGAF50000368246 fastq.gz 2.3 GB
EGAF50000368261 fastq.gz 1.7 GB
EGAF50000368262 fastq.gz 1.8 GB
EGAF50000368271 fastq.gz 1.9 GB
EGAF50000368272 fastq.gz 2.0 GB
EGAF50000368285 fastq.gz 2.1 GB
EGAF50000368286 fastq.gz 2.2 GB
EGAF50000368290 fastq.gz 678.4 MB
EGAF50000368292 fastq.gz 695.9 MB
EGAF50000368299 fastq.gz 2.2 GB
EGAF50000368300 fastq.gz 2.3 GB
EGAF50000368307 fastq.gz 2.8 GB
EGAF50000368308 fastq.gz 2.8 GB
EGAF50000368323 fastq.gz 1.1 GB
EGAF50000368324 fastq.gz 1.1 GB
EGAF50000368333 fastq.gz 1.4 GB
EGAF50000368334 fastq.gz 1.5 GB
EGAF50000368343 fastq.gz 1.1 GB
EGAF50000368344 fastq.gz 1.2 GB
EGAF50000368351 fastq.gz 1.6 GB
EGAF50000368352 fastq.gz 1.6 GB
EGAF50000368353 fastq.gz 1.0 GB
EGAF50000368354 fastq.gz 1.1 GB
EGAF50000368363 fastq.gz 1.7 GB
EGAF50000368364 fastq.gz 1.7 GB
EGAF50000368378 fastq.gz 439.4 MB
EGAF50000368380 fastq.gz 452.9 MB
EGAF50000368387 fastq.gz 1.6 GB
EGAF50000368388 fastq.gz 1.7 GB
EGAF50000368396 fastq.gz 939.7 MB
EGAF50000368398 fastq.gz 964.6 MB
EGAF50000368407 fastq.gz 915.9 MB
EGAF50000368408 fastq.gz 932.0 MB
EGAF50000368415 fastq.gz 990.2 MB
EGAF50000368416 fastq.gz 1.0 GB
EGAF50000368425 fastq.gz 2.0 GB
EGAF50000368426 fastq.gz 2.0 GB
EGAF50000368435 fastq.gz 1.4 GB
EGAF50000368436 fastq.gz 1.5 GB
EGAF50000368443 fastq.gz 3.5 GB
EGAF50000368444 fastq.gz 3.6 GB
EGAF50000368463 fastq.gz 1.6 GB
EGAF50000368464 fastq.gz 1.5 GB
EGAF50000368471 fastq.gz 1.3 GB
EGAF50000368472 fastq.gz 1.3 GB
EGAF50000368479 fastq.gz 1.6 GB
EGAF50000368480 fastq.gz 1.7 GB
EGAF50000368487 fastq.gz 1.8 GB
EGAF50000368488 fastq.gz 1.8 GB
EGAF50000368495 fastq.gz 2.1 GB
EGAF50000368496 fastq.gz 2.1 GB
EGAF50000368505 fastq.gz 2.0 GB
EGAF50000368506 fastq.gz 2.0 GB
EGAF50000368513 fastq.gz 2.2 GB
EGAF50000368514 fastq.gz 2.3 GB
EGAF50000368529 fastq.gz 1.5 GB
EGAF50000368530 fastq.gz 1.5 GB
EGAF50000368539 fastq.gz 1.3 GB
EGAF50000368540 fastq.gz 1.3 GB
EGAF50000368549 fastq.gz 3.5 GB
EGAF50000368550 fastq.gz 3.6 GB
EGAF50000368557 fastq.gz 1.7 GB
EGAF50000368558 fastq.gz 1.7 GB
EGAF50000368567 fastq.gz 2.4 GB
EGAF50000368568 fastq.gz 2.4 GB
EGAF50000368575 fastq.gz 1.9 GB
EGAF50000368576 fastq.gz 1.9 GB
EGAF50000368585 fastq.gz 2.8 GB
EGAF50000368586 fastq.gz 2.8 GB
EGAF50000368599 fastq.gz 2.4 GB
EGAF50000368600 fastq.gz 2.5 GB
EGAF50000368609 fastq.gz 922.0 MB
EGAF50000368610 fastq.gz 947.5 MB
EGAF50000368619 fastq.gz 1.9 GB
EGAF50000368620 fastq.gz 1.9 GB
EGAF50000368629 fastq.gz 1.6 GB
EGAF50000368630 fastq.gz 1.6 GB
EGAF50000368639 fastq.gz 2.2 GB
EGAF50000368640 fastq.gz 2.3 GB
EGAF50000368647 fastq.gz 2.2 GB
EGAF50000368648 fastq.gz 2.2 GB
EGAF50000368657 fastq.gz 2.1 GB
EGAF50000368658 fastq.gz 2.1 GB
EGAF50000368667 fastq.gz 2.2 GB
EGAF50000368668 fastq.gz 2.3 GB
EGAF50000368677 fastq.gz 2.3 GB
EGAF50000368678 fastq.gz 2.4 GB
EGAF50000368687 fastq.gz 1.9 GB
EGAF50000368688 fastq.gz 1.9 GB
EGAF50000368697 fastq.gz 826.2 MB
EGAF50000368698 fastq.gz 846.6 MB
EGAF50000368705 fastq.gz 2.1 GB
EGAF50000368706 fastq.gz 2.2 GB
EGAF50000368715 fastq.gz 2.6 GB
EGAF50000368716 fastq.gz 2.6 GB
EGAF50000368724 fastq.gz 1.6 GB
EGAF50000368726 fastq.gz 1.7 GB
EGAF50000368735 fastq.gz 3.3 GB
EGAF50000368737 fastq.gz 3.4 GB
EGAF50000368745 fastq.gz 1.5 GB
EGAF50000368746 fastq.gz 1.5 GB
EGAF50000368753 fastq.gz 2.0 GB
EGAF50000368758 fastq.gz 2.0 GB
EGAF50000368763 fastq.gz 1.6 GB
EGAF50000368764 fastq.gz 1.6 GB
EGAF50000368773 fastq.gz 2.0 GB
EGAF50000368774 fastq.gz 2.1 GB
EGAF50000368783 fastq.gz 1.6 GB
EGAF50000368785 fastq.gz 3.2 GB
EGAF50000368793 fastq.gz 1.6 GB
EGAF50000368802 fastq.gz 2.7 GB
EGAF50000368803 fastq.gz 2.7 GB
EGAF50000368812 fastq.gz 2.8 GB
EGAF50000368813 fastq.gz 2.7 GB
EGAF50000368826 fastq.gz 2.6 GB
EGAF50000368835 fastq.gz 1.9 GB
EGAF50000368836 fastq.gz 2.0 GB
EGAF50000368845 fastq.gz 1.9 GB
EGAF50000368847 fastq.gz 2.0 GB
EGAF50000368859 fastq.gz 1.7 GB
EGAF50000368860 fastq.gz 1.8 GB
EGAF50000368869 fastq.gz 1.6 GB
EGAF50000368871 fastq.gz 1.6 GB
EGAF50000368881 fastq.gz 1.4 GB
EGAF50000368883 fastq.gz 1.4 GB
EGAF50000368891 fastq.gz 1.2 GB
EGAF50000368892 fastq.gz 1.2 GB
EGAF50000368901 fastq.gz 1.6 GB
EGAF50000368902 fastq.gz 1.6 GB
EGAF50000368911 fastq.gz 1.7 GB
EGAF50000368912 fastq.gz 1.8 GB
EGAF50000368920 fastq.gz 1.6 GB
EGAF50000368922 fastq.gz 1.6 GB
EGAF50000368931 fastq.gz 1.9 GB
EGAF50000368932 fastq.gz 2.0 GB
EGAF50000368939 fastq.gz 1.6 GB
EGAF50000368944 fastq.gz 1.7 GB
EGAF50000368951 fastq.gz 1.7 GB
EGAF50000368952 fastq.gz 1.7 GB
EGAF50000368961 fastq.gz 1.9 GB
EGAF50000368962 fastq.gz 1.9 GB
EGAF50000368971 fastq.gz 1.7 GB
EGAF50000368972 fastq.gz 1.8 GB
EGAF50000368979 fastq.gz 1.7 GB
EGAF50000368984 fastq.gz 1.8 GB
EGAF50000368989 fastq.gz 2.0 GB
EGAF50000368991 fastq.gz 2.1 GB
EGAF50000368997 fastq.gz 2.5 GB
EGAF50000369000 fastq.gz 3.1 GB
EGAF50000369001 xlsx 48.2 kB
167 Files (334.4 GB)