About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNAseq data from 112 samples of benign or malignant ovarian tumours

This dataset contains ~1.2 TB RNA sequencing data in fastq format from 112 samples of fresh-frozen ovarian tumours from a total of 111 women, two samples being replicates. The samples were collected from the U-CAN collection at Uppsala Biobank and include both benign (n = 18) and malignant (n = 94) tumours. The RNA sequencing samples were sequenced using paired-end sequencing (2x150 bp) on an Illumina NovaSeq 6000 instrument at the SciLifeLab National Genomics Infrastructure (NGI) in Uppsala.

Request Access

Uppsala University Data Access Agreement

Uppsala University FEGA Access guide Requests for data Requests for access to these data will be assessed based on Swedish laws and regulations. Requests must include an explicit acceptance of the conditions stated below and information about the following aspects: - The requester must attach an approval from an ethics committee or equivalent body that allows the data to be handled in accordance to the laws and ethical guidelines in the receiving country. - For researchers in the European Union – specify the legal basis according to GDPR to use the data. - Information about how the data will be stored and managed with regards to information security procedures. Requests for data are only accepted if the recipient adheres to the following conditions: Purpose - The recipient agrees to use data only for research. Confidentiality -The recipient agrees to preserve, at all times, the confidentiality of data pertaining to identifiable data subjects. Data protection - Recipients in EU agrees that it, and its registered users, are covered by and shall comply with the obligations contained in the General Data Protection Regulation (EU) 2016/679 ("GDPR"). Upon receipt of the data, the recipient will become controller of the personal data as defined in the GDPR. Recipients outside EU shall comply with relevant national laws concerning the protection of personal data. Uppsala University reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. The recipient agrees that it, and its registered users, shall not analyse or make any use of the data in such a way that has the potential to: (a) lead to the identification of any data subject; or (b) compromise the protected identity of any data subject in any way. Access and Governance - The recipient agrees that it shall take all reasonable security precautions to keep the data confidential. The recipient agrees to, under no circumstances, give access to data to any third party, except to registered users (as described below). The recipient agrees to only give access to data, in whole or part, or any identifiable material derived from the data, to a registered user. The recipient agrees that before it gives any registered user access to data, it shall first inform about the conditions stated in this text and that he or she must comply with the obligations. The recipient shall only give registered users that are not researchers (including but not limited to students or new researchers to the field) access to the data if they are supervised by a researcher who will take responsibility for such registered users’ use of the data. The recipient must make sure that: - Data is processed in a way that ensures the confidentiality and integrity of the data. - Analysis and storage of the data must be performed in a secure environment that ensures that only registered users have access to the data. - Transfer of data must be done through encrypted channels. - There are standard operating routines that ensure that registered users handle the data in accordance with information security and legal requirements. - In the case of a personal data breach, the recipient must immediately inform Uppsala University, and the appropriate national data protection authority, of such an incident. Errors - The recipient must notify the Uppsala University of any errors detected in the data. Acknowledgement of data use - The recipient agrees to acknowledge the creators and source of the data in any work based in whole or part on the Data. Definitions: “Research” shall mean research that is seeking to advance the understanding of the research purpose stated in the ethics approval or equivalent document. “Registered User” shall mean a researcher (or an individual conducting research under the supervision of a researcher) that is employed by the recipient and is bound by confidentiality and has been informed of the conditions stated above. For the avoidance of doubt, “Registered User” may also include students, visiting academics, contractors, sub-contractors or independent consultants provided that any such individual is bound by confidentiality and non-use obligations no less onerous than those binding the recipient’s employees.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001045 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000375708 fastq.gz 3.8 GB
Federated EGA
EGAF50000375709 fastq.gz 3.9 GB
Federated EGA
EGAF50000375710 fastq.gz 3.4 GB
Federated EGA
EGAF50000375711 fastq.gz 3.7 GB
Federated EGA
EGAF50000375712 fastq.gz 6.9 GB
Federated EGA
EGAF50000375713 fastq.gz 7.3 GB
Federated EGA
EGAF50000375714 fastq.gz 5.6 GB
Federated EGA
EGAF50000375715 fastq.gz 5.9 GB
Federated EGA
EGAF50000375716 fastq.gz 5.6 GB
Federated EGA
EGAF50000375717 fastq.gz 6.1 GB
Federated EGA
EGAF50000375718 fastq.gz 4.6 GB
Federated EGA
EGAF50000375719 fastq.gz 4.9 GB
Federated EGA
EGAF50000375720 fastq.gz 5.6 GB
Federated EGA
EGAF50000375721 fastq.gz 5.9 GB
Federated EGA
EGAF50000375722 fastq.gz 3.6 GB
Federated EGA
EGAF50000375723 fastq.gz 3.9 GB
Federated EGA
EGAF50000375724 fastq.gz 6.3 GB
Federated EGA
EGAF50000375725 fastq.gz 6.6 GB
Federated EGA
EGAF50000375726 fastq.gz 7.0 GB
Federated EGA
EGAF50000375727 fastq.gz 7.5 GB
Federated EGA
EGAF50000375728 fastq.gz 5.8 GB
Federated EGA
EGAF50000375729 fastq.gz 6.2 GB
Federated EGA
EGAF50000375730 fastq.gz 4.5 GB
Federated EGA
EGAF50000375731 fastq.gz 4.7 GB
Federated EGA
EGAF50000375732 fastq.gz 6.8 GB
Federated EGA
EGAF50000375733 fastq.gz 7.1 GB
Federated EGA
EGAF50000375734 fastq.gz 3.8 GB
Federated EGA
EGAF50000375735 fastq.gz 4.1 GB
Federated EGA
EGAF50000375736 fastq.gz 5.6 GB
Federated EGA
EGAF50000375737 fastq.gz 5.9 GB
Federated EGA
EGAF50000375738 fastq.gz 8.3 GB
Federated EGA
EGAF50000375739 fastq.gz 8.7 GB
Federated EGA
EGAF50000375740 fastq.gz 5.2 GB
Federated EGA
EGAF50000375741 fastq.gz 5.5 GB
Federated EGA
EGAF50000375742 fastq.gz 6.3 GB
Federated EGA
EGAF50000375743 fastq.gz 6.7 GB
Federated EGA
EGAF50000375744 fastq.gz 3.1 GB
Federated EGA
EGAF50000375745 fastq.gz 3.3 GB
Federated EGA
EGAF50000375746 fastq.gz 4.7 GB
Federated EGA
EGAF50000375747 fastq.gz 5.0 GB
Federated EGA
EGAF50000375748 fastq.gz 7.2 GB
Federated EGA
EGAF50000375749 fastq.gz 7.6 GB
Federated EGA
EGAF50000375750 fastq.gz 6.6 GB
Federated EGA
EGAF50000375751 fastq.gz 7.0 GB
Federated EGA
EGAF50000375752 fastq.gz 4.1 GB
Federated EGA
EGAF50000375753 fastq.gz 4.4 GB
Federated EGA
EGAF50000375754 fastq.gz 2.9 GB
Federated EGA
EGAF50000375755 fastq.gz 3.0 GB
Federated EGA
EGAF50000375756 fastq.gz 5.4 GB
Federated EGA
EGAF50000375757 fastq.gz 5.7 GB
Federated EGA
EGAF50000375758 fastq.gz 6.8 GB
Federated EGA
EGAF50000375759 fastq.gz 6.9 GB
Federated EGA
EGAF50000375760 fastq.gz 5.8 GB
Federated EGA
EGAF50000375761 fastq.gz 6.1 GB
Federated EGA
EGAF50000375762 fastq.gz 7.2 GB
Federated EGA
EGAF50000375763 fastq.gz 7.5 GB
Federated EGA
EGAF50000375764 fastq.gz 3.8 GB
Federated EGA
EGAF50000375765 fastq.gz 4.1 GB
Federated EGA
EGAF50000375766 fastq.gz 5.5 GB
Federated EGA
EGAF50000375767 fastq.gz 5.9 GB
Federated EGA
EGAF50000375768 fastq.gz 5.0 GB
Federated EGA
EGAF50000375769 fastq.gz 5.3 GB
Federated EGA
EGAF50000375770 fastq.gz 5.3 GB
Federated EGA
EGAF50000375771 fastq.gz 5.5 GB
Federated EGA
EGAF50000375772 fastq.gz 6.3 GB
Federated EGA
EGAF50000375773 fastq.gz 6.8 GB
Federated EGA
EGAF50000375774 fastq.gz 5.0 GB
Federated EGA
EGAF50000375775 fastq.gz 5.3 GB
Federated EGA
EGAF50000375776 fastq.gz 8.4 GB
Federated EGA
EGAF50000375777 fastq.gz 8.9 GB
Federated EGA
EGAF50000375778 fastq.gz 7.7 GB
Federated EGA
EGAF50000375779 fastq.gz 8.0 GB
Federated EGA
EGAF50000375780 fastq.gz 6.5 GB
Federated EGA
EGAF50000375781 fastq.gz 6.9 GB
Federated EGA
EGAF50000375782 fastq.gz 4.2 GB
Federated EGA
EGAF50000375783 fastq.gz 4.5 GB
Federated EGA
EGAF50000375784 fastq.gz 4.4 GB
Federated EGA
EGAF50000375785 fastq.gz 4.7 GB
Federated EGA
EGAF50000375786 fastq.gz 3.9 GB
Federated EGA
EGAF50000375787 fastq.gz 4.2 GB
Federated EGA
EGAF50000375788 fastq.gz 5.4 GB
Federated EGA
EGAF50000375789 fastq.gz 5.8 GB
Federated EGA
EGAF50000375790 fastq.gz 4.7 GB
Federated EGA
EGAF50000375791 fastq.gz 5.0 GB
Federated EGA
EGAF50000375792 fastq.gz 4.5 GB
Federated EGA
EGAF50000375793 fastq.gz 4.7 GB
Federated EGA
EGAF50000375794 fastq.gz 3.0 GB
Federated EGA
EGAF50000375795 fastq.gz 3.3 GB
Federated EGA
EGAF50000375796 fastq.gz 7.3 GB
Federated EGA
EGAF50000375797 fastq.gz 7.7 GB
Federated EGA
EGAF50000375798 fastq.gz 6.2 GB
Federated EGA
EGAF50000375799 fastq.gz 6.6 GB
Federated EGA
EGAF50000375800 fastq.gz 2.6 GB
Federated EGA
EGAF50000375801 fastq.gz 2.8 GB
Federated EGA
EGAF50000375802 fastq.gz 5.5 GB
Federated EGA
EGAF50000375803 fastq.gz 5.8 GB
Federated EGA
EGAF50000375804 fastq.gz 3.9 GB
Federated EGA
EGAF50000375805 fastq.gz 4.1 GB
Federated EGA
EGAF50000375806 fastq.gz 6.7 GB
Federated EGA
EGAF50000375807 fastq.gz 7.1 GB
Federated EGA
EGAF50000375808 fastq.gz 5.0 GB
Federated EGA
EGAF50000375809 fastq.gz 5.3 GB
Federated EGA
EGAF50000375810 fastq.gz 4.4 GB
Federated EGA
EGAF50000375811 fastq.gz 4.7 GB
Federated EGA
EGAF50000375812 fastq.gz 8.3 GB
Federated EGA
EGAF50000375813 fastq.gz 8.8 GB
Federated EGA
EGAF50000375814 fastq.gz 7.2 GB
Federated EGA
EGAF50000375815 fastq.gz 7.5 GB
Federated EGA
EGAF50000375816 fastq.gz 5.1 GB
Federated EGA
EGAF50000375817 fastq.gz 5.4 GB
Federated EGA
EGAF50000375818 fastq.gz 6.2 GB
Federated EGA
EGAF50000375819 fastq.gz 6.5 GB
Federated EGA
EGAF50000375820 fastq.gz 6.4 GB
Federated EGA
EGAF50000375821 fastq.gz 6.8 GB
Federated EGA
EGAF50000375822 fastq.gz 4.5 GB
Federated EGA
EGAF50000375823 fastq.gz 4.8 GB
Federated EGA
EGAF50000375824 fastq.gz 5.7 GB
Federated EGA
EGAF50000375825 fastq.gz 6.0 GB
Federated EGA
EGAF50000378134 fastq.gz 8.0 GB
Federated EGA
EGAF50000378135 fastq.gz 8.5 GB
Federated EGA
EGAF50000378136 fastq.gz 4.4 GB
Federated EGA
EGAF50000378137 fastq.gz 4.7 GB
Federated EGA
EGAF50000378138 fastq.gz 4.8 GB
Federated EGA
EGAF50000378139 fastq.gz 5.1 GB
Federated EGA
EGAF50000378140 fastq.gz 8.0 GB
Federated EGA
EGAF50000378141 fastq.gz 8.5 GB
Federated EGA
EGAF50000378142 fastq.gz 6.0 GB
Federated EGA
EGAF50000378143 fastq.gz 6.4 GB
Federated EGA
EGAF50000378144 fastq.gz 7.1 GB
Federated EGA
EGAF50000378145 fastq.gz 7.5 GB
Federated EGA
EGAF50000378146 fastq.gz 4.9 GB
Federated EGA
EGAF50000378147 fastq.gz 5.1 GB
Federated EGA
EGAF50000378148 fastq.gz 6.5 GB
Federated EGA
EGAF50000378149 fastq.gz 6.9 GB
Federated EGA
EGAF50000378150 fastq.gz 5.9 GB
Federated EGA
EGAF50000378151 fastq.gz 6.3 GB
Federated EGA
EGAF50000378152 fastq.gz 4.3 GB
Federated EGA
EGAF50000378153 fastq.gz 4.5 GB
Federated EGA
EGAF50000378154 fastq.gz 5.8 GB
Federated EGA
EGAF50000378155 fastq.gz 6.1 GB
Federated EGA
EGAF50000378156 fastq.gz 4.0 GB
Federated EGA
EGAF50000378157 fastq.gz 4.3 GB
Federated EGA
EGAF50000378158 fastq.gz 5.4 GB
Federated EGA
EGAF50000378159 fastq.gz 5.9 GB
Federated EGA
EGAF50000378160 fastq.gz 4.3 GB
Federated EGA
EGAF50000378161 fastq.gz 4.5 GB
Federated EGA
EGAF50000378162 fastq.gz 4.9 GB
Federated EGA
EGAF50000378163 fastq.gz 5.2 GB
Federated EGA
EGAF50000378164 fastq.gz 5.1 GB
Federated EGA
EGAF50000378165 fastq.gz 5.4 GB
Federated EGA
EGAF50000378166 fastq.gz 5.9 GB
Federated EGA
EGAF50000378167 fastq.gz 6.2 GB
Federated EGA
EGAF50000378168 fastq.gz 4.1 GB
Federated EGA
EGAF50000378169 fastq.gz 4.3 GB
Federated EGA
EGAF50000378170 fastq.gz 6.5 GB
Federated EGA
EGAF50000378171 fastq.gz 6.9 GB
Federated EGA
EGAF50000378172 fastq.gz 7.8 GB
Federated EGA
EGAF50000378173 fastq.gz 8.3 GB
Federated EGA
EGAF50000378174 fastq.gz 4.3 GB
Federated EGA
EGAF50000378175 fastq.gz 4.6 GB
Federated EGA
EGAF50000378176 fastq.gz 5.8 GB
Federated EGA
EGAF50000378177 fastq.gz 6.3 GB
Federated EGA
EGAF50000378178 fastq.gz 6.8 GB
Federated EGA
EGAF50000378179 fastq.gz 7.2 GB
Federated EGA
EGAF50000378180 fastq.gz 3.9 GB
Federated EGA
EGAF50000378181 fastq.gz 4.1 GB
Federated EGA
EGAF50000378182 fastq.gz 4.3 GB
Federated EGA
EGAF50000378183 fastq.gz 4.5 GB
Federated EGA
EGAF50000378184 fastq.gz 3.9 GB
Federated EGA
EGAF50000378185 fastq.gz 4.2 GB
Federated EGA
EGAF50000378186 fastq.gz 4.5 GB
Federated EGA
EGAF50000378187 fastq.gz 4.8 GB
Federated EGA
EGAF50000378188 fastq.gz 4.8 GB
Federated EGA
EGAF50000378189 fastq.gz 5.1 GB
Federated EGA
EGAF50000378190 fastq.gz 5.3 GB
Federated EGA
EGAF50000378191 fastq.gz 5.6 GB
Federated EGA
EGAF50000378192 fastq.gz 4.4 GB
Federated EGA
EGAF50000378193 fastq.gz 4.7 GB
Federated EGA
EGAF50000378194 fastq.gz 6.2 GB
Federated EGA
EGAF50000378195 fastq.gz 6.5 GB
Federated EGA
EGAF50000378196 fastq.gz 6.2 GB
Federated EGA
EGAF50000378197 fastq.gz 6.7 GB
Federated EGA
EGAF50000378198 fastq.gz 6.2 GB
Federated EGA
EGAF50000378199 fastq.gz 6.7 GB
Federated EGA
EGAF50000378200 fastq.gz 4.7 GB
Federated EGA
EGAF50000378201 fastq.gz 5.0 GB
Federated EGA
EGAF50000378202 fastq.gz 4.9 GB
Federated EGA
EGAF50000378203 fastq.gz 5.2 GB
Federated EGA
EGAF50000378204 fastq.gz 4.4 GB
Federated EGA
EGAF50000378205 fastq.gz 4.6 GB
Federated EGA
EGAF50000378206 fastq.gz 4.8 GB
Federated EGA
EGAF50000378207 fastq.gz 5.0 GB
Federated EGA
EGAF50000378208 fastq.gz 5.6 GB
Federated EGA
EGAF50000378209 fastq.gz 6.0 GB
Federated EGA
EGAF50000378210 fastq.gz 6.1 GB
Federated EGA
EGAF50000378211 fastq.gz 6.5 GB
Federated EGA
EGAF50000378212 fastq.gz 3.9 GB
Federated EGA
EGAF50000378213 fastq.gz 4.1 GB
Federated EGA
EGAF50000378214 fastq.gz 5.9 GB
Federated EGA
EGAF50000378215 fastq.gz 6.2 GB
Federated EGA
EGAF50000378216 fastq.gz 4.3 GB
Federated EGA
EGAF50000378217 fastq.gz 4.6 GB
Federated EGA
EGAF50000378218 fastq.gz 5.0 GB
Federated EGA
EGAF50000378219 fastq.gz 5.3 GB
Federated EGA
EGAF50000378220 fastq.gz 7.5 GB
Federated EGA
EGAF50000378221 fastq.gz 7.8 GB
Federated EGA
EGAF50000378222 fastq.gz 6.6 GB
Federated EGA
EGAF50000378223 fastq.gz 6.9 GB
Federated EGA
EGAF50000378224 fastq.gz 10.7 GB
Federated EGA
EGAF50000378225 fastq.gz 11.2 GB
Federated EGA
EGAF50000378226 fastq.gz 6.0 GB
Federated EGA
EGAF50000378227 fastq.gz 6.3 GB
Federated EGA
EGAF50000378228 fastq.gz 7.5 GB
Federated EGA
EGAF50000378229 fastq.gz 8.0 GB
Federated EGA
EGAF50000378230 fastq.gz 382.6 MB
Federated EGA
EGAF50000378231 fastq.gz 404.2 MB
Federated EGA
EGAF50000378232 fastq.gz 6.6 GB
Federated EGA
EGAF50000378233 fastq.gz 7.0 GB
Federated EGA
EGAF50000378234 fastq.gz 5.3 GB
Federated EGA
EGAF50000378235 fastq.gz 5.5 GB
Federated EGA
EGAF50000378236 fastq.gz 7.9 GB
Federated EGA
EGAF50000378237 fastq.gz 8.4 GB
Federated EGA
EGAF50000378238 fastq.gz 6.1 GB
Federated EGA
EGAF50000378239 fastq.gz 6.5 GB
Federated EGA
224 Files (1.3 TB)