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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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This dataset contains the Fastq files from the RNA sequencing

Whole blood was stimulated Ex vivo with Heat Killed M abscessus and M haemophilum or left untreated with Saline for each individual Healthy Control and MH-infected participants

Request Access

DUO:0000012
version: 2021-02-23

research specific restrictions

This data use modifier indicates that use is limited to studies of a certain research type.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000029
version: 2021-02-23

return to database or resource

This data use modifier indicates that the requestor must return derived/enriched data to the database/resource.

DUO:0000044
version: 2021-02-23

population origins or ancestry research prohibited

This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

Data access policy for DNA and RNA sequencing from Human with M. haemophilum infection and controls

This dataset contains pseudonymised human DNA (exome) and RNA sequencing data generated to investigate genetic and immunological susceptibility to Mycobacterium haemophilum infection and related immune responses in cases and controls. Access is restricted to bona fide researchers at non-profit academic, clinical or public research institutions, for non-commercial research that is scientifically justified and clearly aligned with the aims described in the approved application. Data may only be used for the specific research project approved by the Data Access Committee (DAC) for this dataset. Any substantial change in objectives, or any new project, will require submission of a new data access request and DAC approval. The data may not be used for population origins or ancestry research, for general methods development that is unrelated to the approved research questions, or for any activity intended to identify or contact individual participants. Applicants must have appropriate approval (or a formal waiver) from a competent Research Ethics Committee / Institutional Review Board for their proposed project, sign the applicable Data Access Agreement, and implement suitable technical and organisational measures to ensure secure storage and handling of the data. Data use is time-limited to the period specified in the approved application and/or Data Access Agreement, after which the data must be securely destroyed or archived as instructed by the DAC and in accordance with local regulations. Data may not be shared with unauthorised third parties or transferred to another institution without prior written permission from the DAC. Users are expected to publish only aggregate, non-identifiable results, to acknowledge the original investigators, the Data Access Committee (EGAC50000000806) and the relevant EGA accession numbers in all presentations and publications, and, where appropriate, to return derived data or summary statistics to the resource in line with the Data Access Agreement and EGA policies.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001077 Transcriptome Sequencing
  • dac update
  • updated policy
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000384583 fastq.gz 2.2 GB
EGAF50000384584 fastq.gz 2.2 GB
EGAF50000384585 fastq.gz 2.6 GB
EGAF50000384586 fastq.gz 2.7 GB
EGAF50000384587 fastq.gz 1.7 GB
EGAF50000384588 fastq.gz 1.8 GB
EGAF50000384589 fastq.gz 3.1 GB
EGAF50000384590 fastq.gz 3.3 GB
EGAF50000384591 fastq.gz 3.4 GB
EGAF50000384592 fastq.gz 3.5 GB
EGAF50000384593 fastq.gz 2.1 GB
EGAF50000384594 fastq.gz 2.2 GB
EGAF50000384595 fastq.gz 2.2 GB
EGAF50000384596 fastq.gz 2.3 GB
EGAF50000384597 fastq.gz 3.4 GB
EGAF50000384598 fastq.gz 3.7 GB
EGAF50000384599 fastq.gz 2.8 GB
EGAF50000384600 fastq.gz 3.0 GB
EGAF50000384601 fastq.gz 2.9 GB
EGAF50000384602 fastq.gz 3.0 GB
EGAF50000384603 fastq.gz 2.5 GB
EGAF50000384604 fastq.gz 2.6 GB
EGAF50000384605 fastq.gz 3.5 GB
EGAF50000384606 fastq.gz 3.4 GB
EGAF50000384607 fastq.gz 2.0 GB
EGAF50000384608 fastq.gz 2.1 GB
EGAF50000384609 fastq.gz 1.1 GB
EGAF50000384610 fastq.gz 1.3 GB
EGAF50000384611 fastq.gz 2.1 GB
EGAF50000384612 fastq.gz 2.2 GB
EGAF50000384613 fastq.gz 1.8 GB
EGAF50000384614 fastq.gz 1.9 GB
EGAF50000384615 fastq.gz 1.8 GB
EGAF50000384616 fastq.gz 1.7 GB
EGAF50000384617 fastq.gz 3.0 GB
EGAF50000384618 fastq.gz 3.2 GB
EGAF50000384619 fastq.gz 1.6 GB
EGAF50000384620 fastq.gz 1.5 GB
EGAF50000384621 fastq.gz 2.5 GB
EGAF50000384622 fastq.gz 2.6 GB
EGAF50000384623 fastq.gz 1.6 GB
EGAF50000384624 fastq.gz 1.8 GB
42 Files (101.8 GB)