Mate pair whole genome sequencing of 98 AML samples

This dataset contains bam-files from Mate-pair whole genome sequencing of 98 AML samples. DNA was extracted from either bone marow or peripheral blood from primary AML samples. The libraries were prepared using Illumina Nextera mate pair library preparation kit, generating long-insert (2-8 kb) paired end libraries. These were sequenced on an Illumina NextSeq 500 using 2x76bp paired end chemistry. The fastq files generated by sequencing were aligned to the human hg19 reference genome (ucsc.hg19.fasta from the GATK resource bundle) using bwa (0.7.15-r1140) and duplicate reads were identified using samblaster (0.1.24).

30/06/2025
98 samples
DAC: EGAC50000000619
Technology: NextSeq 500

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS50000001084	The cellular state space of AML unveils novel NPM1 subtypes with distinct clinical outcomes and immune evasion properties	Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Located in i
EGAF50000381397	bam	5.9 GB	Federated EGA
EGAF50000381398	bam	4.3 GB	Federated EGA
EGAF50000381399	bam	4.0 GB	Federated EGA
EGAF50000381400	bam	4.4 GB	Federated EGA
EGAF50000381401	bam	5.2 GB	Federated EGA
EGAF50000381402	bam	4.3 GB	Federated EGA
EGAF50000381403	bam	5.7 GB	Federated EGA
EGAF50000381404	bam	4.8 GB	Federated EGA
EGAF50000381405	bam	7.8 GB	Federated EGA
EGAF50000381406	bam	7.5 GB	Federated EGA
EGAF50000381407	bam	6.8 GB	Federated EGA
EGAF50000381408	bam	4.1 GB	Federated EGA
EGAF50000381409	bam	5.0 GB	Federated EGA
EGAF50000381410	bam	6.0 GB	Federated EGA
EGAF50000381411	bam	6.8 GB	Federated EGA
EGAF50000381412	bam	6.2 GB	Federated EGA
EGAF50000381413	bam	5.8 GB	Federated EGA
EGAF50000381414	bam	3.7 GB	Federated EGA
EGAF50000381415	bam	4.3 GB	Federated EGA
EGAF50000381416	bam	5.0 GB	Federated EGA
EGAF50000381417	bam	4.0 GB	Federated EGA
EGAF50000381418	bam	5.4 GB	Federated EGA
EGAF50000381419	bam	4.8 GB	Federated EGA
EGAF50000381420	bam	4.4 GB	Federated EGA
EGAF50000381421	bam	3.8 GB	Federated EGA
EGAF50000381422	bam	5.0 GB	Federated EGA
EGAF50000381423	bam	7.3 GB	Federated EGA
EGAF50000381424	bam	6.5 GB	Federated EGA
EGAF50000381425	bam	4.5 GB	Federated EGA
EGAF50000381426	bam	3.4 GB	Federated EGA
EGAF50000381427	bam	6.9 GB	Federated EGA
EGAF50000381428	bam	6.6 GB	Federated EGA
EGAF50000381429	bam	4.4 GB	Federated EGA
EGAF50000381430	bam	4.7 GB	Federated EGA
EGAF50000381431	bam	5.6 GB	Federated EGA
EGAF50000381432	bam	4.0 GB	Federated EGA
EGAF50000381433	bam	5.5 GB	Federated EGA
EGAF50000381434	bam	5.1 GB	Federated EGA
EGAF50000381435	bam	4.4 GB	Federated EGA
EGAF50000381436	bam	7.7 GB	Federated EGA
EGAF50000381437	bam	10.9 GB	Federated EGA
EGAF50000381438	bam	9.3 GB	Federated EGA
EGAF50000381439	bam	8.0 GB	Federated EGA
EGAF50000381440	bam	5.5 GB	Federated EGA
EGAF50000381441	bam	5.3 GB	Federated EGA
EGAF50000381442	bam	4.9 GB	Federated EGA
EGAF50000381443	bam	5.9 GB	Federated EGA
EGAF50000381444	bam	7.0 GB	Federated EGA
EGAF50000381445	bam	5.5 GB	Federated EGA
EGAF50000381446	bam	4.4 GB	Federated EGA
EGAF50000381447	bam	5.3 GB	Federated EGA
EGAF50000381448	bam	5.6 GB	Federated EGA
EGAF50000381449	bam	4.0 GB	Federated EGA
EGAF50000381450	bam	4.4 GB	Federated EGA
EGAF50000381451	bam	3.9 GB	Federated EGA
EGAF50000381452	bam	2.7 GB	Federated EGA
EGAF50000381453	bam	4.4 GB	Federated EGA
EGAF50000381454	bam	4.1 GB	Federated EGA
EGAF50000381455	bam	3.8 GB	Federated EGA
EGAF50000381456	bam	4.8 GB	Federated EGA
EGAF50000381457	bam	4.0 GB	Federated EGA
EGAF50000381458	bam	5.3 GB	Federated EGA
EGAF50000381459	bam	5.5 GB	Federated EGA
EGAF50000381460	bam	3.7 GB	Federated EGA
EGAF50000381461	bam	4.6 GB	Federated EGA
EGAF50000381462	bam	5.9 GB	Federated EGA
EGAF50000381463	bam	7.7 GB	Federated EGA
EGAF50000381464	bam	6.0 GB	Federated EGA
EGAF50000381465	bam	5.2 GB	Federated EGA
EGAF50000381466	bam	4.4 GB	Federated EGA
EGAF50000381467	bam	4.3 GB	Federated EGA
EGAF50000381468	bam	4.8 GB	Federated EGA
EGAF50000381469	bam	6.6 GB	Federated EGA
EGAF50000381470	bam	6.6 GB	Federated EGA
EGAF50000381471	bam	4.7 GB	Federated EGA
EGAF50000381472	bam	5.6 GB	Federated EGA
EGAF50000381473	bam	5.5 GB	Federated EGA
EGAF50000381474	bam	5.4 GB	Federated EGA
EGAF50000381475	bam	4.1 GB	Federated EGA
EGAF50000381476	bam	6.4 GB	Federated EGA
EGAF50000381477	bam	4.8 GB	Federated EGA
EGAF50000381478	bam	3.1 GB	Federated EGA
EGAF50000381479	bam	3.0 GB	Federated EGA
EGAF50000381480	bam	5.0 GB	Federated EGA
EGAF50000381481	bam	6.3 GB	Federated EGA
EGAF50000381482	bam	4.8 GB	Federated EGA
EGAF50000381483	bam	5.3 GB	Federated EGA
EGAF50000381484	bam	6.1 GB	Federated EGA
EGAF50000381485	bam	5.6 GB	Federated EGA
EGAF50000381486	bam	4.9 GB	Federated EGA
EGAF50000381487	bam	4.7 GB	Federated EGA
EGAF50000381488	bam	4.3 GB	Federated EGA
EGAF50000381489	bam	3.8 GB	Federated EGA
EGAF50000381490	bam	5.1 GB	Federated EGA
EGAF50000381491	bam	4.9 GB	Federated EGA
EGAF50000381492	bam	5.0 GB	Federated EGA
EGAF50000381493	bam	4.2 GB	Federated EGA
EGAF50000381494	bam	5.3 GB	Federated EGA
98 Files (513.8 GB)