About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA bulk sequencing on organoids from different organs with or without TS2/16 antibody

RNA bulk sequencing on organoids from colon, ileum, jejunum, duodenum and pancreas duct with or without TS2/16 antibody. Also there is difference in extracellular matrix used, BME vs Colagen.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0004992

DUO:0000016
version: 2021-02-23

genetic studies only

This data use modifier indicates that use is limited to genetic studies only (i.e., studies that include genotype research alone or both genotype and phenotype research, but not phenotype research exclusively)

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

Policy for study "RNA bulk sequencing on organoids from different organs with or without TS2/16 antibody"

The Data Access Committee of the Department of Biomedical Genetics of UMC Utrecht (DAC-DGB-UMCU) governs data access to genomic datasets and accompanying metadata via a two-step access request procedure. Access to data will only be granted to qualified users for appropriate use. Step 1: contact the DAC-DBG-UMCU at DACDBG@umcutrecht.nl, providing a brief summary of your research proposal and the requested datasets. Your proposal will be reviewed based on the necessity of the requested dataset to answer the specific research question. Step 2: The DAC will request additional documentation to complete your application. The DAC-DBG-UMCU will decide if data access is permitted by evaluating the feasibility of the project, the scientific profile of the applicant(s), and whether the relevant ethical approvals justify the proposed research. Only unanimous voting results in acceptation of the request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001113 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000400791 fastq.gz 848.8 MB
EGAF50000400792 fastq.gz 807.3 MB
EGAF50000400793 fastq.gz 766.1 MB
EGAF50000400794 fastq.gz 813.8 MB
EGAF50000400795 fastq.gz 770.0 MB
EGAF50000400796 fastq.gz 892.8 MB
EGAF50000400797 fastq.gz 837.6 MB
EGAF50000400798 fastq.gz 798.2 MB
EGAF50000400799 fastq.gz 754.7 MB
EGAF50000400800 fastq.gz 835.2 MB
EGAF50000400801 fastq.gz 785.4 MB
EGAF50000400802 fastq.gz 843.8 MB
EGAF50000400803 fastq.gz 796.9 MB
EGAF50000400804 fastq.gz 723.2 MB
EGAF50000400805 fastq.gz 686.5 MB
EGAF50000400806 fastq.gz 844.5 MB
EGAF50000400807 fastq.gz 798.2 MB
EGAF50000400808 fastq.gz 833.5 MB
EGAF50000400809 fastq.gz 784.0 MB
EGAF50000400810 fastq.gz 889.5 MB
EGAF50000400811 fastq.gz 843.5 MB
EGAF50000400812 fastq.gz 928.1 MB
EGAF50000400813 fastq.gz 879.1 MB
EGAF50000400814 fastq.gz 841.8 MB
EGAF50000400815 fastq.gz 793.8 MB
EGAF50000400816 fastq.gz 798.6 MB
EGAF50000400817 fastq.gz 843.8 MB
EGAF50000400818 fastq.gz 794.1 MB
EGAF50000400819 fastq.gz 672.5 MB
EGAF50000400820 fastq.gz 640.7 MB
EGAF50000400821 fastq.gz 836.5 MB
EGAF50000400822 fastq.gz 797.4 MB
EGAF50000400823 fastq.gz 817.0 MB
EGAF50000400824 fastq.gz 773.1 MB
EGAF50000400825 fastq.gz 843.3 MB
EGAF50000400826 fastq.gz 810.9 MB
EGAF50000400827 fastq.gz 833.2 MB
EGAF50000400828 fastq.gz 790.8 MB
EGAF50000400829 fastq.gz 838.4 MB
EGAF50000400830 fastq.gz 796.0 MB
EGAF50000400831 fastq.gz 787.5 MB
EGAF50000400832 fastq.gz 749.2 MB
EGAF50000400833 fastq.gz 915.3 MB
EGAF50000400834 fastq.gz 863.8 MB
EGAF50000400835 fastq.gz 734.7 MB
EGAF50000400836 fastq.gz 706.3 MB
EGAF50000400837 fastq.gz 794.1 MB
EGAF50000400838 fastq.gz 753.7 MB
EGAF50000400839 fastq.gz 821.0 MB
EGAF50000400840 fastq.gz 773.9 MB
EGAF50000400841 fastq.gz 869.4 MB
EGAF50000400842 fastq.gz 821.0 MB
EGAF50000400843 fastq.gz 910.9 MB
EGAF50000400844 fastq.gz 867.5 MB
EGAF50000400845 fastq.gz 809.0 MB
EGAF50000400846 fastq.gz 766.3 MB
EGAF50000400847 fastq.gz 839.1 MB
EGAF50000400848 fastq.gz 795.9 MB
EGAF50000400849 fastq.gz 881.5 MB
EGAF50000400850 fastq.gz 833.3 MB
EGAF50000400851 fastq.gz 742.6 MB
EGAF50000400852 fastq.gz 701.3 MB
62 Files (50.0 GB)