RNAseq
Libraries for sixty-eight cases (23 EATL and 45 MEITL) were prepared starting from 1 µg of total RNA using the TruSeq Stranded total RNA Gold kit from Illumina (San Diego, California, USA) and were sequenced in three batches on a HiSeq 4000 machine from Illumina with an average output of 63 million reads per sample (range 49-126).
- 04/11/2025
- 75 samples
- DAC: EGAC50000000314
- Technology: Illumina HiSeq 4000
DUO:0000015 version: 2021-02-23
no general methods research
This data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms).
DUO:0000018 version: 2021-02-23
not for profit, non commercial use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
DUO:0000020 version: 2021-02-23
collaboration required
This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).
DUO:0000021 version: 2021-02-23
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000026 version: 2021-02-23
user specific restriction
This data use modifier indicates that use is limited to use by approved users.
DUO:0000027 version: 2021-02-23
project specific restriction
This data use modifier indicates that use is limited to use within an approved project.
DUO:0000043 version: 2021-02-23
clinical care use
This data use modifier indicates that use is allowed for clinical use and care.
IPA at CHUV DAC
DUO Codes selected: -No general methods research -Ethics approval required -Clinical care use -Project specific restriction -User specific restriction -Not for profit, non commercial use only - collaboration required
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001125 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000401850 | fastq.gz | 3.3 GB |
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| EGAF50000401863 | fastq.gz | 3.3 GB |
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| EGAF50000401864 | fastq.gz | 3.9 GB |
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| EGAF50000401865 | fastq.gz | 4.1 GB |
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| EGAF50000401866 | fastq.gz | 3.1 GB |
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| EGAF50000401888 | fastq.gz | 3.2 GB |
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| EGAF50000401889 | fastq.gz | 5.0 GB |
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| EGAF50000401890 | fastq.gz | 3.0 GB |
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| EGAF50000401891 | fastq.gz | 3.6 GB |
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| EGAF50000401892 | fastq.gz | 4.3 GB |
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| EGAF50000401893 | fastq.gz | 8.4 GB |
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| EGAF50000401894 | fastq.gz | 2.9 GB |
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| EGAF50000401895 | fastq.gz | 3.5 GB |
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| EGAF50000401896 | fastq.gz | 4.2 GB |
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| EGAF50000401897 | fastq.gz | 2.9 GB |
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| EGAF50000401898 | fastq.gz | 3.2 GB |
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| EGAF50000401899 | fastq.gz | 2.7 GB |
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| EGAF50000401900 | fastq.gz | 3.2 GB |
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| EGAF50000401901 | fastq.gz | 3.6 GB |
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| EGAF50000401902 | fastq.gz | 4.0 GB |
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| EGAF50000401903 | fastq.gz | 3.4 GB |
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| EGAF50000401904 | fastq.gz | 4.1 GB |
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| EGAF50000401905 | fastq.gz | 3.4 GB |
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| EGAF50000401906 | fastq.gz | 3.8 GB |
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| EGAF50000401907 | fastq.gz | 3.3 GB |
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| EGAF50000401908 | fastq.gz | 3.5 GB |
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| EGAF50000401909 | fastq.gz | 2.7 GB |
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| EGAF50000401910 | fastq.gz | 3.3 GB |
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| EGAF50000401915 | fastq.gz | 3.2 GB |
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| EGAF50000401916 | fastq.gz | 3.4 GB |
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| EGAF50000401943 | fastq.gz | 4.5 GB |
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| EGAF50000401944 | fastq.gz | 2.8 GB |
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| EGAF50000401945 | fastq.gz | 3.5 GB |
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| EGAF50000401946 | fastq.gz | 3.3 GB |
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| EGAF50000401947 | fastq.gz | 4.0 GB |
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| EGAF50000401948 | fastq.gz | 2.2 GB |
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| EGAF50000401949 | fastq.gz | 2.6 GB |
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| EGAF50000401954 | fastq.gz | 3.0 GB |
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| EGAF50000401955 | fastq.gz | 3.1 GB |
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| EGAF50000401956 | fastq.gz | 3.2 GB |
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| EGAF50000401957 | fastq.gz | 3.6 GB |
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| EGAF50000401958 | fastq.gz | 3.2 GB |
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| EGAF50000401959 | fastq.gz | 3.0 GB |
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| EGAF50000401960 | fastq.gz | 2.9 GB |
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| EGAF50000401961 | fastq.gz | 3.3 GB |
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| EGAF50000401962 | fastq.gz | 3.6 GB |
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| EGAF50000401963 | fastq.gz | 4.6 GB |
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| EGAF50000401964 | fastq.gz | 2.9 GB |
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| EGAF50000401965 | fastq.gz | 3.4 GB |
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| EGAF50000401966 | fastq.gz | 2.8 GB |
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| EGAF50000401967 | fastq.gz | 3.2 GB |
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| EGAF50000401968 | fastq.gz | 2.8 GB |
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| EGAF50000401969 | fastq.gz | 3.0 GB |
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| EGAF50000401970 | fastq.gz | 3.0 GB |
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| EGAF50000401971 | fastq.gz | 3.4 GB |
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| EGAF50000401972 | fastq.gz | 3.0 GB |
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| EGAF50000401973 | fastq.gz | 3.4 GB |
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| EGAF50000401974 | fastq.gz | 2.6 GB |
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| EGAF50000401975 | fastq.gz | 6.5 GB |
|
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| EGAF50000401976 | fastq.gz | 7.7 GB |
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| EGAF50000401977 | fastq.gz | 4.6 GB |
|
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| EGAF50000401978 | fastq.gz | 3.3 GB |
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| EGAF50000401979 | fastq.gz | 2.9 GB |
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| EGAF50000401980 | fastq.gz | 3.5 GB |
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| EGAF50000401981 | fastq.gz | 2.9 GB |
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| EGAF50000401982 | fastq.gz | 3.4 GB |
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| EGAF50000401983 | fastq.gz | 2.8 GB |
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| EGAF50000401984 | fastq.gz | 3.1 GB |
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| EGAF50000401985 | fastq.gz | 3.6 GB |
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| EGAF50000401986 | fastq.gz | 3.7 GB |
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| EGAF50000401987 | fastq.gz | 3.0 GB |
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| EGAF50000401988 | fastq.gz | 3.6 GB |
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| EGAF50000402005 | fastq.gz | 2.9 GB |
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| EGAF50000402009 | fastq.gz | 3.2 GB |
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| EGAF50000402011 | fastq.gz | 2.9 GB |
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| EGAF50000402012 | fastq.gz | 3.0 GB |
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| EGAF50000402031 | fastq.gz | 3.5 GB |
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| EGAF50000402032 | fastq.gz | 4.8 GB |
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| EGAF50000402035 | fastq.gz | 6.8 GB |
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| EGAF50000402036 | fastq.gz | 2.7 GB |
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| EGAF50000402037 | fastq.gz | 3.6 GB |
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| EGAF50000402038 | fastq.gz | 2.7 GB |
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| EGAF50000402039 | fastq.gz | 3.1 GB |
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| EGAF50000402040 | fastq.gz | 3.1 GB |
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| EGAF50000402041 | fastq.gz | 3.7 GB |
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| EGAF50000402042 | fastq.gz | 4.0 GB |
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| EGAF50000402043 | fastq.gz | 3.8 GB |
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| EGAF50000402044 | fastq.gz | 2.9 GB |
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| EGAF50000402045 | fastq.gz | 3.2 GB |
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| EGAF50000402046 | fastq.gz | 3.0 GB |
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| EGAF50000402047 | fastq.gz | 3.9 GB |
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| EGAF50000402048 | fastq.gz | 3.1 GB |
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| EGAF50000402060 | fastq.gz | 3.2 GB |
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| EGAF50000402061 | fastq.gz | 3.7 GB |
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| EGAF50000402063 | fastq.gz | 3.6 GB |
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| EGAF50000402064 | fastq.gz | 2.6 GB |
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| EGAF50000402065 | fastq.gz | 3.1 GB |
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| EGAF50000402066 | fastq.gz | 3.6 GB |
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| EGAF50000402067 | fastq.gz | 3.7 GB |
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| EGAF50000402068 | fastq.gz | 2.9 GB |
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| EGAF50000402069 | fastq.gz | 3.4 GB |
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| EGAF50000402070 | fastq.gz | 5.4 GB |
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| EGAF50000402071 | fastq.gz | 2.6 GB |
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| EGAF50000402075 | fastq.gz | 2.9 GB |
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| EGAF50000402076 | fastq.gz | 3.3 GB |
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| EGAF50000402077 | fastq.gz | 2.7 GB |
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| EGAF50000402078 | fastq.gz | 3.2 GB |
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| EGAF50000402080 | fastq.gz | 2.8 GB |
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| EGAF50000402081 | fastq.gz | 2.9 GB |
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| EGAF50000402082 | fastq.gz | 3.5 GB |
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| EGAF50000402083 | fastq.gz | 2.6 GB |
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| EGAF50000402084 | fastq.gz | 2.9 GB |
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| EGAF50000402085 | fastq.gz | 3.0 GB |
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| EGAF50000402086 | fastq.gz | 3.2 GB |
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| EGAF50000402087 | fastq.gz | 3.6 GB |
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| EGAF50000402097 | fastq.gz | 3.9 GB |
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| EGAF50000402098 | fastq.gz | 3.5 GB |
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| EGAF50000402099 | fastq.gz | 3.1 GB |
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| EGAF50000402102 | fastq.gz | 4.2 GB |
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| EGAF50000402105 | fastq.gz | 4.2 GB |
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| EGAF50000402106 | fastq.gz | 4.8 GB |
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| EGAF50000402107 | fastq.gz | 3.1 GB |
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| EGAF50000402108 | fastq.gz | 3.0 GB |
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| EGAF50000402109 | fastq.gz | 2.7 GB |
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| EGAF50000402110 | fastq.gz | 3.1 GB |
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| EGAF50000402111 | fastq.gz | 4.8 GB |
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| EGAF50000402117 | fastq.gz | 3.0 GB |
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| EGAF50000402118 | fastq.gz | 3.0 GB |
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| EGAF50000402134 | fastq.gz | 3.5 GB |
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| EGAF50000402135 | fastq.gz | 4.1 GB |
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| EGAF50000402136 | fastq.gz | 2.7 GB |
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| EGAF50000402137 | fastq.gz | 3.1 GB |
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| EGAF50000402138 | fastq.gz | 2.9 GB |
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| EGAF50000402140 | fastq.gz | 3.7 GB |
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| EGAF50000402151 | fastq.gz | 3.7 GB |
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| EGAF50000402152 | fastq.gz | 3.9 GB |
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| EGAF50000402153 | fastq.gz | 3.8 GB |
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| EGAF50000402154 | fastq.gz | 4.1 GB |
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| EGAF50000402155 | fastq.gz | 4.3 GB |
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| EGAF50000402156 | fastq.gz | 4.6 GB |
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| EGAF50000402157 | fastq.gz | 3.9 GB |
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| EGAF50000402158 | fastq.gz | 3.0 GB |
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| EGAF50000402159 | fastq.gz | 3.4 GB |
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| EGAF50000402160 | fastq.gz | 4.0 GB |
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| EGAF50000402161 | fastq.gz | 4.2 GB |
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| EGAF50000402162 | fastq.gz | 4.2 GB |
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| EGAF50000402163 | fastq.gz | 4.5 GB |
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| EGAF50000402164 | fastq.gz | 3.6 GB |
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| EGAF50000402165 | fastq.gz | 2.8 GB |
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| EGAF50000402172 | fastq.gz | 2.8 GB |
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| 150 Files (525.0 GB) | ||||