About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole-genome sequencing data of poorly differentiated thyroid carcinomas and matched blood from six patients

This dataset contains raw sequencing reads in FASTQ format from 12 samples, comprising paired tumour and matched blood DNA from six patients diagnosed with poorly differentiated thyroid carcinoma (PDTC). Genomic DNA was extracted from fresh-frozen tumour tissue and peripheral blood using standard protocols. Whole-genome sequencing was performed on the Illumina HiSeq X Ten platform, generating paired-end reads at an average depth of approximately 20X. These data support investigations into the somatic mutational landscape and genomic alterations associated with PDTC.

Request Access

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

Access Policy for Poorly Differentiated Thyroid Cancer WGS Data

The dataset includes whole-genome sequencing data generated from paired tumour and matched blood samples from patients with poorly differentiated thyroid cancer. Data access is controlled and managed by the University of Sydney Thyroid Cancer Data Access Committee (DAC). Requests for access must include: The purpose of the research and intended data use Evidence of Human Research Ethics Committee (HREC) approval or justification for exemption A list of project team members accessing the data Confirmation that the data will not be used for commercial purposes or to attempt re-identification of participants Requests will be reviewed by the DAC to ensure consistency with participant consent, applicable ethics protocols, and institutional data governance policies. Data will only be used for research aligned with the approved project scope, and redistribution of the data is not permitted.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001134 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000402440 fastq.gz 40.4 GB
EGAF50000402441 fastq.gz 50.1 GB
EGAF50000402442 fastq.gz 38.4 GB
EGAF50000402443 fastq.gz 36.7 GB
EGAF50000402444 fastq.gz 46.8 GB
EGAF50000402445 fastq.gz 46.2 GB
EGAF50000402446 fastq.gz 51.5 GB
EGAF50000402447 fastq.gz 42.0 GB
EGAF50000402448 fastq.gz 47.2 GB
EGAF50000402449 fastq.gz 39.0 GB
EGAF50000402450 fastq.gz 47.7 GB
EGAF50000402451 fastq.gz 38.1 GB
EGAF50000402452 fastq.gz 41.5 GB
EGAF50000402453 fastq.gz 52.8 GB
EGAF50000402454 fastq.gz 41.1 GB
EGAF50000402455 fastq.gz 52.5 GB
EGAF50000402456 fastq.gz 51.5 GB
EGAF50000402457 fastq.gz 38.5 GB
EGAF50000402458 fastq.gz 46.7 GB
EGAF50000402459 fastq.gz 41.3 GB
EGAF50000402460 fastq.gz 40.2 GB
EGAF50000402461 fastq.gz 50.2 GB
EGAF50000402462 fastq.gz 41.2 GB
EGAF50000402463 fastq.gz 49.9 GB
EGAF50000402464 fastq.gz 37.6 GB
EGAF50000402465 fastq.gz 47.4 GB
EGAF50000402466 fastq.gz 42.3 GB
EGAF50000402467 fastq.gz 39.2 GB
EGAF50000402468 fastq.gz 32.2 GB
EGAF50000402469 fastq.gz 52.7 GB
EGAF50000402470 fastq.gz 40.4 GB
EGAF50000402471 fastq.gz 50.5 GB
EGAF50000402472 fastq.gz 32.1 GB
EGAF50000402473 fastq.gz 26.8 GB
EGAF50000402474 fastq.gz 37.6 GB
EGAF50000402475 fastq.gz 46.8 GB
36 Files (1.6 TB)