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WGS dataset for Multimodal antigenic escape to GPRC5D-targeted T-cell engagers in multiple myeloma

We analyzed the genome of plasma cells collected from bone marrow samples or plasmocytoma from patients prior to (when available) and progression on anti-GPRC5D T cell engagers. Dataset includes tumor and matched normal WGS data aligned to GRCh38.p14 in bam format, as well as tumor small variant and CNV calls.

Request Access

Requests to access the data should follow the guidance as outlined in the policy agreement below. Requests are to be submitted to members of the data access committee, including a brief description of the research project (complete Appendix II in the policy section below) and approval by the requestor institution. All requests will be reviewed by the members of the data access committee as well as the Governors of the University of Calgary

DATA ACCESS AGREEMENT BETWEEN THE GOVERNORS OF THE UNIVERSITY OF CALGARY 2500 University Drive NW Calgary, Alberta T2N 1N4 Canada (“UCalgary”) and OTHER PARTY These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom UCalgary grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: UCalgary and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research but does not include commercial purposes. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documen ts/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution shall be entitled to publish the results of the Project. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees that it will consult with UCalgary in respect to licensing of any downstream discovery to ensure that UCalgary is not in breach of any third-party commitments that UCalgary has made in respect of the data. 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify UCalgary within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify UCalgary prior to any significant changes to the protocol for the Project. 14. The User Institution will notify UCalgary as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. UCalgary may terminate this agreement upon thirty (30) days written notice to the User Institution for material breach, which shall only take effect if User Institution either fails or cannot cure the material breach within thirty (30) days of receiving notice. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than UCalgary. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001148 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000182219 bam 372.8 GB Report
EGAF50000182248 bam 377.6 GB Report
EGAF50000182277 bam 322.7 GB Report
EGAF50000182282 bam 379.9 GB Report
EGAF50000182284 bam 403.3 GB Report
EGAF50000196444 bam 320.6 GB Report
EGAF50000404588 bam 169.4 GB
EGAF50000404589 bam 163.8 GB
EGAF50000404590 bam 167.0 GB
EGAF50000404591 bam 385.3 GB
EGAF50000404592 bam 411.3 GB
EGAF50000404593 bam 418.3 GB
EGAF50000404594 bam 176.7 GB
EGAF50000404595 bam 167.4 GB
EGAF50000404596 bam 340.2 MB
EGAF50000404597 bam 177.8 GB
EGAF50000404598 bam 167.1 GB
EGAF50000404599 bam 149.8 GB
EGAF50000404600 bam 52.2 GB
EGAF50000404601 bam 72.3 GB
EGAF50000404602 bam 161.5 GB
EGAF50000404603 bam 414.9 GB
EGAF50000404604 bam 416.6 GB
EGAF50000404605 bam 163.4 GB
EGAF50000404606 bam 135.8 GB
EGAF50000404607 bam 415.4 GB
EGAF50000404608 bam 431.0 GB
EGAF50000404609 bam 353.2 GB
EGAF50000404610 bam 375.5 GB
EGAF50000404611 bam 378.8 GB
EGAF50000404612 bam 96.2 GB
EGAF50000404613 bam 185.4 GB
EGAF50000404614 bam 375.1 GB
EGAF50000404615 bam 166.9 GB
EGAF50000404616 bam 396.4 GB
EGAF50000404617 bam 400.1 GB
EGAF50000404618 bam 169.4 GB
EGAF50000404619 bam 417.7 GB
EGAF50000404620 bam 443.7 GB
EGAF50000404621 bam 382.8 GB
EGAF50000404622 bam 380.2 GB
EGAF50000404623 bam 162.2 GB
EGAF50000404624 bam 173.8 GB
EGAF50000404625 bam 136.0 GB
EGAF50000404626 bam 166.6 GB
EGAF50000404627 bam 409.0 GB
EGAF50000404628 bam 400.2 GB
EGAF50000404629 vcf 227.5 MB
EGAF50000404630 vcf 289.3 MB
EGAF50000404631 vcf 27.9 kB
EGAF50000404632 txt 5.7 kB
EGAF50000404633 txt 7.7 kB
EGAF50000404634 txt 10.5 kB
EGAF50000404635 txt 10.4 kB
EGAF50000404636 txt 4.0 kB
EGAF50000404637 txt 3.1 kB
EGAF50000404638 txt 4.0 kB
EGAF50000404639 txt 3.7 kB
EGAF50000404640 txt 5.0 kB
EGAF50000404641 txt 5.0 kB
EGAF50000404642 txt 4.1 kB
EGAF50000404643 txt 3.8 kB
EGAF50000404644 txt 6.0 kB
EGAF50000404645 txt 6.1 kB
EGAF50000404646 txt 8.6 kB
EGAF50000404647 txt 7.4 kB
EGAF50000404648 txt 5.7 kB
EGAF50000404649 txt 5.6 kB
EGAF50000404650 txt 4.0 kB
EGAF50000404651 txt 20.5 kB
EGAF50000404652 txt 6.4 kB
EGAF50000404653 txt 6.7 kB
EGAF50000404654 txt 3.3 kB
EGAF50000404655 txt 4.6 kB
EGAF50000404656 txt 11.6 kB
EGAF50000404657 vcf 15.4 MB
EGAF50000404658 vcf 6.1 MB
EGAF50000404659 vcf 17.8 MB
EGAF50000404660 vcf 14.5 MB
EGAF50000404661 vcf 12.8 MB
EGAF50000404662 vcf 14.1 MB
EGAF50000404663 vcf 5.2 MB
EGAF50000404664 vcf 2.0 MB
EGAF50000404665 vcf 2.3 MB
EGAF50000404666 vcf 24.2 MB
EGAF50000404667 vcf 24.3 MB
EGAF50000404668 vcf 3.4 MB
EGAF50000404669 vcf 2.7 MB
EGAF50000404670 vcf 18.2 MB
EGAF50000404671 vcf 4.9 MB
EGAF50000404672 vcf 13.2 MB
EGAF50000404673 vcf 4.6 MB
EGAF50000404674 vcf 28.6 MB
EGAF50000404675 vcf 7.7 MB
EGAF50000404676 vcf 7.0 MB
EGAF50000404677 vcf 22.8 MB
EGAF50000404678 vcf 5.9 MB
EGAF50000404679 vcf 3.9 MB
EGAF50000404680 vcf 6.8 MB
EGAF50000404681 vcf 14.2 MB
EGAF50000404682 cns 399.5 kB
EGAF50000404683 cns 463.7 kB
EGAF50000404684 cns 433.1 kB
EGAF50000404685 cns 897.4 kB
EGAF50000404686 cns 422.7 kB
EGAF50000404687 cns 398.7 kB
EGAF50000404688 cns 414.8 kB
EGAF50000404689 cns 400.2 kB
EGAF50000404690 cns 465.8 kB
EGAF50000404691 cns 1.6 MB
EGAF50000404692 cns 440.6 kB
EGAF50000404693 cns 459.6 kB
EGAF50000404694 cns 402.5 kB
EGAF50000404695 cns 380.7 kB
EGAF50000404696 cns 400.6 kB
EGAF50000404697 cns 447.4 kB
EGAF50000404698 cns 387.2 kB
EGAF50000404699 cns 456.1 kB
EGAF50000404700 cns 447.6 kB
EGAF50000404701 cns 1.7 kB
120 Files (13.0 TB)