Transcriptomic analyisis of 54 samples of AC16 cells exposed to trastuzumab
Data of 54 samples with their 54 paired fastaq files that were sequenced in a Novaseq 6000 platform. Samples correspond to the three biological replicates of AC16 cells (i.e. AC16, C1, C2). Each biological replicate was edited to carry either of the three different genotypes of the rs1136201 variant (i.e. AA, AG, GG) and each genotype was enriched to express HER2 protein in three levels (i.e. low, medium and high expression) as selected by FACS. Additionally, treatment of each sample was performed and sequenced in duplicates (i.e. 1 and 2)
- 19/01/2026
- 54 samples
- DAC: EGAC00001003090
- Technology: Illumina NovaSeq 6000
DAA for the group formed in 'DAC for the study molecular biomarkers associated with the diagnosis and severity of genetic diseases
At the time of requesting access to the data deposited by this DAC, the project in which the researcher will use these data must, without exception, be funded and therefore must be approved by the corresponding Ethics Committee (CE), for studies involving human participants.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001197 | Transcriptome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000417409 | fq.gz | 2.0 GB |
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| EGAF50000417410 | fq.gz | 1.9 GB |
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| EGAF50000417411 | fq.gz | 1.7 GB |
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| EGAF50000417412 | fq.gz | 1.8 GB |
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| EGAF50000417413 | fq.gz | 1.9 GB |
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| EGAF50000417414 | fq.gz | 1.9 GB |
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| EGAF50000417415 | fq.gz | 1.6 GB |
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| EGAF50000417416 | fq.gz | 1.7 GB |
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| EGAF50000417417 | fq.gz | 1.6 GB |
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| EGAF50000417418 | fq.gz | 1.6 GB |
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| EGAF50000417419 | fq.gz | 1.9 GB |
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| EGAF50000417420 | fq.gz | 1.9 GB |
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| EGAF50000417421 | fq.gz | 2.2 GB |
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| EGAF50000417422 | fq.gz | 2.2 GB |
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| EGAF50000417423 | fq.gz | 1.7 GB |
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| EGAF50000417424 | fq.gz | 1.7 GB |
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| EGAF50000417425 | fq.gz | 135.3 MB |
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| EGAF50000417426 | fq.gz | 1.8 GB |
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| EGAF50000417427 | fq.gz | 1.8 GB |
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| EGAF50000417428 | fq.gz | 1.8 GB |
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| EGAF50000417429 | fq.gz | 1.8 GB |
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| EGAF50000417430 | fq.gz | 1.9 GB |
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| EGAF50000417431 | fq.gz | 1.9 GB |
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| EGAF50000417432 | fq.gz | 1.7 GB |
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| EGAF50000417433 | fq.gz | 1.7 GB |
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| EGAF50000417434 | fq.gz | 1.8 GB |
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| EGAF50000417435 | fq.gz | 1.8 GB |
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| EGAF50000417436 | fq.gz | 1.8 GB |
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| EGAF50000417437 | fq.gz | 1.8 GB |
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| EGAF50000417438 | fq.gz | 1.7 GB |
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| EGAF50000417439 | fq.gz | 1.7 GB |
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| EGAF50000417440 | fq.gz | 1.6 GB |
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| EGAF50000417441 | fq.gz | 1.7 GB |
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| EGAF50000417442 | fq.gz | 1.5 GB |
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| EGAF50000417443 | fq.gz | 1.5 GB |
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| EGAF50000417444 | fq.gz | 2.3 GB |
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| EGAF50000417445 | fq.gz | 2.3 GB |
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| EGAF50000417446 | fq.gz | 1.7 GB |
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| EGAF50000417447 | fq.gz | 1.7 GB |
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| EGAF50000417448 | fq.gz | 2.0 GB |
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| EGAF50000417449 | fq.gz | 2.1 GB |
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| EGAF50000417450 | fq.gz | 1.8 GB |
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| EGAF50000417451 | fq.gz | 1.8 GB |
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| EGAF50000417452 | fq.gz | 1.5 GB |
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| EGAF50000417453 | fq.gz | 1.6 GB |
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| EGAF50000417454 | fq.gz | 1.6 GB |
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| EGAF50000417455 | fq.gz | 1.6 GB |
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| EGAF50000417456 | fq.gz | 2.1 GB |
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| EGAF50000417457 | fq.gz | 2.1 GB |
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| EGAF50000417458 | fq.gz | 1.8 GB |
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| EGAF50000417459 | fq.gz | 1.8 GB |
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| EGAF50000417460 | fq.gz | 1.1 GB |
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| EGAF50000417461 | fq.gz | 2.2 GB |
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| EGAF50000417462 | fq.gz | 1.8 GB |
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| EGAF50000417463 | fq.gz | 1.9 GB |
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| EGAF50000417464 | fq.gz | 2.0 GB |
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| EGAF50000417465 | fq.gz | 2.1 GB |
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| EGAF50000417466 | fq.gz | 1.7 GB |
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| EGAF50000417467 | fq.gz | 1.7 GB |
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| EGAF50000417468 | fq.gz | 1.7 GB |
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| EGAF50000417469 | fq.gz | 1.8 GB |
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| EGAF50000417470 | fq.gz | 2.0 GB |
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| EGAF50000417471 | fq.gz | 2.0 GB |
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| EGAF50000417472 | fq.gz | 942.6 MB |
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| EGAF50000417473 | fq.gz | 1.5 GB |
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| EGAF50000417474 | fq.gz | 2.0 GB |
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| EGAF50000417475 | fq.gz | 1.9 GB |
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| EGAF50000417476 | fq.gz | 2.0 GB |
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| EGAF50000417477 | fq.gz | 2.0 GB |
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| EGAF50000417478 | fq.gz | 1.6 GB |
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| EGAF50000417479 | fq.gz | 1.6 GB |
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| EGAF50000417480 | fq.gz | 1.6 GB |
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| EGAF50000417481 | fq.gz | 1.6 GB |
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| EGAF50000417482 | fq.gz | 2.1 GB |
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| EGAF50000417483 | fq.gz | 2.0 GB |
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| EGAF50000417484 | fq.gz | 1.8 GB |
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| EGAF50000417485 | fq.gz | 1.8 GB |
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| EGAF50000417486 | fq.gz | 1.7 GB |
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| EGAF50000417487 | fq.gz | 1.7 GB |
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| EGAF50000417488 | fq.gz | 1.6 GB |
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| EGAF50000417489 | fq.gz | 1.6 GB |
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| EGAF50000417490 | fq.gz | 1.7 GB |
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| EGAF50000417491 | fq.gz | 1.7 GB |
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| EGAF50000417492 | fq.gz | 1.7 GB |
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| EGAF50000417493 | fq.gz | 1.8 GB |
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| EGAF50000417494 | fq.gz | 1.7 GB |
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| EGAF50000417495 | fq.gz | 1.7 GB |
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| EGAF50000417496 | fq.gz | 2.1 GB |
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| EGAF50000417497 | fq.gz | 2.1 GB |
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| EGAF50000417498 | fq.gz | 1.5 GB |
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| EGAF50000417499 | fq.gz | 1.5 GB |
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| EGAF50000417500 | fq.gz | 1.7 GB |
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| EGAF50000417501 | fq.gz | 1.7 GB |
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| EGAF50000417502 | fq.gz | 1.7 GB |
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| EGAF50000417503 | fq.gz | 1.8 GB |
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| EGAF50000417504 | fq.gz | 2.0 GB |
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| EGAF50000417505 | fq.gz | 2.0 GB |
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| EGAF50000417506 | fq.gz | 1.5 GB |
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| EGAF50000417507 | fq.gz | 1.5 GB |
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| EGAF50000417508 | fq.gz | 2.1 GB |
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| EGAF50000417509 | fq.gz | 2.2 GB |
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| EGAF50000417510 | fq.gz | 1.5 GB |
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| EGAF50000417511 | fq.gz | 1.5 GB |
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| EGAF50000417512 | fq.gz | 2.0 GB |
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| EGAF50000417513 | fq.gz | 2.1 GB |
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| EGAF50000417514 | fq.gz | 2.1 GB |
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| EGAF50000417515 | fq.gz | 2.2 GB |
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| 107 Files (191.1 GB) | ||||