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cell-free methylated DNA immunoprecipitation and high-throughput sequencing data for samples from liver transplant recpients with graft pathologies

Bam and indexed bam files after removal of duplicates and trimming of the unique molecular identifiers. Sequencing was performed on NovaSeq 6000 platform.

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University health network data access commitee; EGAC00001000912

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom the Data Access Committee (DAC) grants access to the Data. This includes the User, and those individuals under the direct supervision of the User, as well as any other individuals listed in Appendix II. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access, as is outlined in the Appendix 1 attached hereto. Data Producers: The Principal Investigator responsible for the creation of this Data and other investigators responsible for the creation of this Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. Research Ethics Board Approval shall mean approval of the Project by the User Institution’s research ethics board or other research ethics board or independent review board for whom said User Institution obtains research ethics approval(s). User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. University Health Network: The University Health Network (UHN) is the largest clinical and research hospital in Canada. UHN is affiliated with the University of Toronto and is a member of the Toronto Academic Health Science Network. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) within the Research Purposes, and only in accordance with Research Ethics Board Approval, and any conditions or restrictions imposed pursuant to such Research Ethics Board Approval. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise breach the anonymity of the Research Participants, including agreeing to not attempt to re-identify or contact any Research Participant. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect the Data. Despite the confidentiality of the Data, the User Institution may publish aggregate data and other results arising from use of the Data and may refer to the Data by reference to the accession number(s) as documented in Appendix I in further support of any publication resulting from use of said Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of re-identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data in a way that could re-identify the Research Participants, even if access to that other data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data and enter into a separate Data Access Agreement. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or provision of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees recognize the contribution of the Data Producers and include a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. 11. The User Institution agrees to destroy/delete the Data held, once it is no longer being used for the Project, or in the event that the User departs the User Institution or otherwise can no longer complete the Project, with the proviso that the User Institution can retain a copy of the Data for archival purposes only in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of the User, at which point the Project will terminate and the User Institution delete or destroy the Data (as per Section 11) unless otherwise agreed by the DAC. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Either party may terminate this agreement by written notice to the other party. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. The Parties agree to remain silent on choice of law.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007171 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000420554 bai 2.9 MB
EGAF50000420555 bai 3.3 MB
EGAF50000420556 bai 4.3 MB
EGAF50000420557 bai 3.1 MB
EGAF50000420558 bai 3.4 MB
EGAF50000420559 bai 3.1 MB
EGAF50000420560 bai 3.1 MB
EGAF50000420561 bai 3.0 MB
EGAF50000420562 bai 2.7 MB
EGAF50000420563 bai 3.1 MB
EGAF50000420564 bai 3.2 MB
EGAF50000420565 bai 3.2 MB
EGAF50000420566 bai 3.4 MB
EGAF50000420567 bai 2.8 MB
EGAF50000420568 bam 1.1 GB
EGAF50000420569 bai 2.8 MB
EGAF50000420570 bam 1.8 GB
EGAF50000420571 bai 2.9 MB
EGAF50000420572 bam 1.8 GB
EGAF50000420573 bam 292.0 MB
EGAF50000420574 bam 2.4 GB
EGAF50000420575 bai 3.4 MB
EGAF50000420576 bai 4.9 MB
EGAF50000420577 bai 3.5 MB
EGAF50000420578 bam 1.5 GB
EGAF50000420579 bai 2.6 MB
EGAF50000420580 bam 899.9 MB
EGAF50000420581 bam 1.0 GB
EGAF50000420582 bam 854.8 MB
EGAF50000420583 bam 1.9 GB
EGAF50000420584 bam 5.9 GB
EGAF50000420585 bam 6.4 GB
EGAF50000420586 bam 6.6 GB
EGAF50000420587 bam 6.6 GB
EGAF50000420588 bam 6.8 GB
EGAF50000420589 bam 6.9 GB
EGAF50000420590 bam 7.0 GB
EGAF50000420591 bai 4.1 MB
EGAF50000420592 bai 2.6 MB
EGAF50000420593 bai 3.8 MB
EGAF50000420594 bai 2.6 MB
EGAF50000420595 bai 2.6 MB
EGAF50000420596 bai 3.7 MB
EGAF50000420597 bai 2.7 MB
EGAF50000420598 bai 2.5 MB
EGAF50000420599 bai 3.4 MB
EGAF50000420600 bam 7.6 GB
EGAF50000420601 bam 8.1 GB
EGAF50000420602 bam 769.8 MB
EGAF50000420603 bam 777.3 MB
EGAF50000420604 bam 856.5 MB
EGAF50000420605 bam 8.1 GB
EGAF50000420606 bam 1.9 GB
EGAF50000420607 bam 1.9 GB
EGAF50000420608 bam 2.5 GB
EGAF50000420609 bam 2.9 GB
EGAF50000420610 bam 3.4 GB
EGAF50000420611 bam 11.3 GB
EGAF50000420612 bai 2.7 MB
EGAF50000420613 bai 2.6 MB
EGAF50000420614 bai 2.6 MB
EGAF50000420615 bai 2.9 MB
EGAF50000420616 bai 2.7 MB
EGAF50000420617 bai 3.1 MB
EGAF50000420618 bai 2.6 MB
EGAF50000420619 bai 2.7 MB
EGAF50000420620 bai 2.8 MB
EGAF50000420621 bai 3.6 MB
EGAF50000420622 bai 4.1 MB
EGAF50000420623 bai 2.7 MB
EGAF50000420624 bai 3.3 MB
EGAF50000420625 bai 2.7 MB
EGAF50000420626 bam 2.3 GB
EGAF50000420627 bam 2.5 GB
EGAF50000420628 bam 2.5 GB
EGAF50000420629 bai 2.7 MB
EGAF50000420630 bai 3.5 MB
EGAF50000420631 bai 2.7 MB
EGAF50000420632 bam 3.1 GB
EGAF50000420633 bam 3.0 GB
EGAF50000420634 bai 3.6 MB
EGAF50000420635 bam 3.5 GB
EGAF50000420636 bai 3.6 MB
EGAF50000420637 bai 3.5 MB
EGAF50000420638 bam 3.8 GB
EGAF50000420639 bai 2.6 MB
EGAF50000420640 bam 902.4 MB
EGAF50000420641 bam 1.0 GB
EGAF50000420642 bai 2.6 MB
EGAF50000420643 bam 4.4 GB
EGAF50000420644 bam 4.6 GB
EGAF50000420645 bai 2.6 MB
EGAF50000420646 bai 2.8 MB
EGAF50000420647 bai 2.6 MB
EGAF50000420648 bam 5.2 GB
EGAF50000420649 bam 5.2 GB
EGAF50000420650 bam 2.6 GB
EGAF50000420651 bam 1.9 GB
EGAF50000420652 bam 4.1 GB
EGAF50000420653 bam 7.1 GB
EGAF50000420654 bam 3.5 GB
EGAF50000420655 bam 2.7 GB
EGAF50000420656 bam 7.5 GB
EGAF50000420657 bam 8.5 GB
EGAF50000420658 bam 3.7 GB
EGAF50000420659 bam 4.2 GB
EGAF50000420660 bam 10.6 GB
EGAF50000420661 bam 8.2 GB
EGAF50000420662 bam 8.7 GB
EGAF50000420663 bai 2.7 MB
EGAF50000420664 bai 2.6 MB
EGAF50000420665 bai 2.8 MB
EGAF50000420666 bai 2.8 MB
EGAF50000420667 bai 2.8 MB
EGAF50000420668 bai 2.6 MB
EGAF50000420669 bai 2.6 MB
EGAF50000420670 bai 4.0 MB
EGAF50000420671 bai 3.4 MB
EGAF50000420672 bai 3.8 MB
EGAF50000420673 bai 3.0 MB
EGAF50000420674 bai 4.1 MB
EGAF50000420675 bai 3.9 MB
EGAF50000420676 bai 2.7 MB
EGAF50000420677 bam 2.6 GB
EGAF50000420678 bai 2.8 MB
EGAF50000420679 bai 2.8 MB
EGAF50000420680 bam 3.0 GB
EGAF50000420681 bam 3.3 GB
EGAF50000420682 bam 3.3 GB
EGAF50000420683 bam 3.2 GB
EGAF50000420684 bam 3.5 GB
EGAF50000420685 bai 2.5 MB
EGAF50000420686 bai 2.8 MB
EGAF50000420687 bai 2.5 MB
EGAF50000420688 bai 2.8 MB
EGAF50000420689 bai 2.6 MB
EGAF50000420690 bam 1.3 GB
EGAF50000420691 bam 4.1 GB
EGAF50000420692 bai 2.8 MB
EGAF50000420693 bam 6.7 GB
EGAF50000420694 bam 3.6 GB
EGAF50000420695 bam 5.4 GB
EGAF50000420696 bam 3.7 GB
EGAF50000420697 bai 2.6 MB
EGAF50000420698 bai 2.6 MB
EGAF50000420699 bam 5.3 GB
EGAF50000420700 bam 3.5 GB
EGAF50000420701 bam 7.9 GB
EGAF50000420702 bai 2.7 MB
EGAF50000420703 bai 2.6 MB
EGAF50000420704 bam 5.2 GB
EGAF50000420705 bam 9.5 GB
EGAF50000420706 bam 10.3 GB
EGAF50000420707 bam 3.5 GB
EGAF50000420708 bam 3.1 GB
EGAF50000420709 bam 9.9 GB
EGAF50000420710 bam 3.1 GB
EGAF50000420711 bam 10.6 GB
EGAF50000420712 bam 3.1 GB
EGAF50000420713 bai 2.7 MB
EGAF50000420714 bai 2.8 MB
EGAF50000420715 bai 2.8 MB
EGAF50000420716 bai 2.6 MB
EGAF50000420717 bai 2.6 MB
EGAF50000420718 bam 3.3 GB
EGAF50000420719 bam 5.1 GB
EGAF50000420720 bai 2.8 MB
EGAF50000420721 bai 2.8 MB
EGAF50000420722 bam 2.4 GB
EGAF50000420723 bam 2.5 GB
EGAF50000420724 bam 3.5 GB
EGAF50000420725 bai 2.8 MB
EGAF50000420726 bai 2.7 MB
EGAF50000420727 bai 2.8 MB
EGAF50000420728 bai 2.8 MB
EGAF50000420729 bam 4.5 GB
EGAF50000420730 bam 2.7 GB
EGAF50000420731 bam 2.7 GB
EGAF50000420732 bam 3.5 GB
EGAF50000420733 bai 2.9 MB
EGAF50000420734 bam 3.5 GB
EGAF50000420735 bam 3.6 GB
EGAF50000420736 bam 3.8 GB
EGAF50000420737 bam 3.6 GB
184 Files (388.6 GB)