About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Head and Neck Organoid Biobank cohort, Issing et. al., 2025, RNA + WES data

This dataset contains the raw fastq files of RNA and whole exome sequencing of the head and neck organoid biobank. For RNA sequencing, 41 organoid samples collected at different timepoints as well as before and after genetic modification are included. For WES, 25 samples of early organoid cultures or matching tumor tissues are included.

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Data access policy of the Head and Neck tumor Organoid Biobank

For access to sequencing data deposited to the European Genome-phenome Archive (EGA), application documents should be completed and returned to the Data Access Committee (DAC) of the Georg-Speyer-Haus, Institute for Tumor Biology and Experimental Therapy (email address: data-access@georg-speyer-haus.de). Applications will only be accepted electronically. Any queries regarding access procedures or completion of the forms should be sent to this address. Additional information on the data access procedure can be obtained on the EGA webpage (https://ega-archive.org/). Application requires the completion of the Data Access Agreement (including Appendix I, II and III) for each data set that must be signed by the legal entity with which you are affiliated (signed and stamped, no electronic signature). Additionally, the DAC needs a document providing proof that the applicant is working in a scientific organization (signed and stamped by a legal authority of the organization). In case of collaborative applications each institution has to submit its own application. User institutions located outside the EU/ EEA (European Economic Area) are requested to additionally enter into the Standard Contractual Clauses for the transfer of personal data to third countries. The form must be completed (including Annex A and B) and signed. Technical problems with the EGA download should be reported directly to the EGA Helpdesk. (helpdesk@ega-archive.org)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001219 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000420953 fastq.gz 1.1 GB
EGAF50000420954 fastq.gz 1.2 GB
EGAF50000420955 fastq.gz 2.1 GB
EGAF50000420956 fastq.gz 1.5 GB
EGAF50000420957 fastq.gz 1.6 GB
EGAF50000420958 fastq.gz 2.1 GB
EGAF50000420959 fastq.gz 1.9 GB
EGAF50000420960 fastq.gz 2.5 GB
EGAF50000420961 fastq.gz 2.7 GB
EGAF50000420962 fastq.gz 2.4 GB
EGAF50000420963 fastq.gz 2.0 GB
EGAF50000420964 fastq.gz 2.7 GB
EGAF50000420965 fastq.gz 152.9 MB
EGAF50000420966 fastq.gz 5.4 GB
EGAF50000420967 fastq.gz 5.2 GB
EGAF50000420968 fastq.gz 1.9 GB
EGAF50000420969 fastq.gz 2.1 GB
EGAF50000420970 fastq.gz 2.5 GB
EGAF50000420971 fastq.gz 2.6 GB
EGAF50000420972 fastq.gz 2.3 GB
EGAF50000420973 fastq.gz 2.1 GB
EGAF50000420974 fastq.gz 2.0 GB
EGAF50000420975 fastq.gz 2.2 GB
EGAF50000420976 fastq.gz 2.1 GB
EGAF50000420977 fastq.gz 2.0 GB
EGAF50000420978 fastq.gz 1.8 GB
EGAF50000420979 fastq.gz 1.9 GB
EGAF50000420980 fastq.gz 2.1 GB
EGAF50000420981 fastq.gz 2.2 GB
EGAF50000420982 fastq.gz 1.8 GB
EGAF50000420983 fastq.gz 2.0 GB
EGAF50000420984 fastq.gz 2.1 GB
EGAF50000420985 fastq.gz 2.5 GB
EGAF50000420986 fastq.gz 2.2 GB
EGAF50000420987 fastq.gz 2.2 GB
EGAF50000420988 fastq.gz 7.6 GB
EGAF50000420989 fastq.gz 4.8 GB
EGAF50000420990 fastq.gz 5.0 GB
EGAF50000420991 fastq.gz 4.0 GB
EGAF50000420992 fastq.gz 4.1 GB
EGAF50000420993 fastq.gz 4.8 GB
EGAF50000420994 fastq.gz 4.9 GB
EGAF50000420995 fastq.gz 6.0 GB
EGAF50000420996 fastq.gz 6.4 GB
EGAF50000420997 fastq.gz 7.1 GB
EGAF50000420998 fastq.gz 5.5 GB
EGAF50000420999 fastq.gz 4.3 GB
EGAF50000421000 fastq.gz 7.2 GB
EGAF50000421001 fastq.gz 4.2 GB
EGAF50000421002 fastq.gz 4.4 GB
EGAF50000421003 fastq.gz 4.7 GB
EGAF50000421004 fastq.gz 4.5 GB
EGAF50000421005 fastq.gz 4.4 GB
EGAF50000421006 fastq.gz 6.4 GB
EGAF50000421007 fastq.gz 8.0 GB
EGAF50000421008 fastq.gz 4.6 GB
EGAF50000421009 fastq.gz 5.1 GB
EGAF50000421010 fastq.gz 5.6 GB
EGAF50000421011 fastq.gz 4.5 GB
EGAF50000421012 fastq.gz 6.2 GB
EGAF50000421013 fastq.gz 7.5 GB
EGAF50000421014 fastq.gz 6.4 GB
EGAF50000421015 fastq.gz 6.3 GB
EGAF50000421016 fastq.gz 4.6 GB
EGAF50000421017 fastq.gz 5.2 GB
EGAF50000421018 fastq.gz 4.8 GB
EGAF50000421019 fastq.gz 4.6 GB
EGAF50000421020 fastq.gz 6.4 GB
EGAF50000421021 fastq.gz 7.0 GB
EGAF50000421022 fastq.gz 7.6 GB
EGAF50000421023 fastq.gz 4.2 GB
EGAF50000421024 fastq.gz 4.3 GB
EGAF50000421025 fastq.gz 4.1 GB
EGAF50000421026 fastq.gz 4.2 GB
EGAF50000421027 fastq.gz 2.5 GB
EGAF50000421028 fastq.gz 2.7 GB
EGAF50000421029 fastq.gz 2.0 GB
EGAF50000421030 fastq.gz 2.1 GB
EGAF50000421031 fastq.gz 2.2 GB
EGAF50000421032 fastq.gz 2.0 GB
EGAF50000421033 fastq.gz 1.9 GB
EGAF50000421034 fastq.gz 4.4 GB
EGAF50000421035 fastq.gz 6.1 GB
EGAF50000421036 fastq.gz 7.1 GB
EGAF50000421037 fastq.gz 5.9 GB
EGAF50000421038 fastq.gz 6.0 GB
EGAF50000421039 fastq.gz 7.3 GB
EGAF50000421040 fastq.gz 7.1 GB
EGAF50000421041 fastq.gz 7.3 GB
EGAF50000421042 fastq.gz 7.5 GB
EGAF50000421043 fastq.gz 1.4 GB
EGAF50000421044 fastq.gz 1.6 GB
EGAF50000421045 fastq.gz 818.9 MB
EGAF50000421046 fastq.gz 887.5 MB
EGAF50000421047 fastq.gz 1.9 GB
EGAF50000421048 fastq.gz 2.0 GB
EGAF50000421049 fastq.gz 1.6 GB
EGAF50000421050 fastq.gz 1.7 GB
EGAF50000421051 fastq.gz 583.5 MB
EGAF50000421052 fastq.gz 637.4 MB
EGAF50000421053 fastq.gz 2.1 GB
EGAF50000421054 fastq.gz 2.4 GB
EGAF50000421055 fastq.gz 2.5 GB
EGAF50000421056 fastq.gz 2.6 GB
EGAF50000421057 fastq.gz 2.2 GB
EGAF50000421058 fastq.gz 865.4 MB
EGAF50000421059 fastq.gz 937.1 MB
EGAF50000421060 fastq.gz 2.0 GB
EGAF50000421061 fastq.gz 2.6 GB
EGAF50000421062 fastq.gz 2.8 GB
EGAF50000421063 fastq.gz 2.1 GB
EGAF50000421064 fastq.gz 2.3 GB
EGAF50000421065 fastq.gz 1.7 GB
EGAF50000421066 fastq.gz 140.8 MB
EGAF50000421067 fastq.gz 2.0 GB
EGAF50000421068 fastq.gz 2.2 GB
EGAF50000421069 fastq.gz 2.0 GB
EGAF50000421070 fastq.gz 2.1 GB
EGAF50000421071 fastq.gz 2.3 GB
EGAF50000421072 fastq.gz 2.4 GB
EGAF50000421073 fastq.gz 2.6 GB
EGAF50000421074 fastq.gz 2.3 GB
EGAF50000421075 fastq.gz 2.0 GB
EGAF50000421076 fastq.gz 2.4 GB
EGAF50000421077 fastq.gz 3.5 GB
EGAF50000421078 fastq.gz 3.0 GB
EGAF50000421079 fastq.gz 1.3 GB
EGAF50000421080 fastq.gz 1.4 GB
EGAF50000421081 fastq.gz 2.3 GB
EGAF50000421082 fastq.gz 2.5 GB
EGAF50000421083 fastq.gz 2.7 GB
EGAF50000421084 fastq.gz 3.1 GB
EGAF50000421085 fastq.gz 2.7 GB
EGAF50000421086 fastq.gz 2.0 GB
EGAF50000421087 fastq.gz 2.1 GB
EGAF50000421088 fastq.gz 2.2 GB
EGAF50000421089 fastq.gz 2.3 GB
EGAF50000421090 fastq.gz 2.7 GB
EGAF50000421091 fastq.gz 2.5 GB
EGAF50000421092 fastq.gz 2.0 GB
140 Files (464.1 GB)