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Holistic ends analysis

This dataset comprises fastq or bam files derived from sequencing data of dsDNA and ssDNA libraries from 138 plasma cfDNA samples.

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This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG).

The CUHK Circulating Nucleic Acids Research Group Data Access Agreement This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). The terms and conditions of access set out in this agreement apply both to the User and the User’s Institution (both as defined below). User is referred to within the agreement as “You” and the term “Your” will be construed accordingly. By signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. Definitions: Group means The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). Data means all and any human genetic data obtained by User or User’s Institution from the Group via the European Genome-phenome Archive. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. In the event that the Data Subject is legally incapable of giving an informed consent, such consent has been given by his/her legal guardian. User means a researcher whose User’s Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance by the Group. Data Access Committee means a committee assigned by the Group for reviewing and approving the data access application of the User. The committee consists of three or more investigators from the Group. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written, electronic, graphical, photographic, recorded (including oral recordings), and verbal presentations of research. User’s Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: By signing this agreement: 1. You agree to use the Data only for the advancement of medical and scientific research, according to the consent given by Data Subjects. 2. You agree not to use the Data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or in part, or any information/material derived from the Data, to others, except as reasonably necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same User’s Institution, the collaborator must make a separate application for access to the Data. 5. You agree to use the Data for the approved purpose and project described in your application only; use of the Data for a new purpose or project will require a new application and approval. 6. You agree to acknowledge in any work based in whole or in part on the Data, the publications from which the Data derives, the version of the Data, and the role of the Group. The wordings of the acknowledgement are “This study makes use of data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group, as reported by Chan et al in Clinical Chemistry (doi:10.1373/clinchem.2012.196014). 7. You accept that the Group, the original data creators, depositors or copyright holders, or the funders of the Group: a) make no warranties or representations with respect to the Data, including but not limited to its fitness for purpose, accuracy or comprehensiveness, the continued access to the Data without interruption; and b) accept no liability for any direct, indirect, consequential, special or incidental, damages or losses arising from or in connection with the use of the Data or this agreement. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that reproduction, except as reasonably required to carry out Your research with the Data in accordance with the approved purpose referred to in paragraph 5 above, or sale of all or part of the Data in any form is not permitted. 9. You agree that nothing in this agreement shall operate to transfer to You or to the User’s Institution any intellectual property rights relating to the Data. 10. You accept that this agreement will be terminated immediately by the Group without notice upon breach of any terms of this agreement by You and You agree to destroy any Data held when required. 11. You accept that it may be necessary for the Group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Group or its appointed agent will to inform You of any changes. You agree that Your continued use of the Data shall be deemed to represent your consent to any revised terms of the Agreement. 12. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User’s Institution. 13. You accept that the Data is protected by the privacy law in the relevant jurisdiction and that You are responsible for ensuring Your use of the Data is in compliance with any such applicable law. Notwithstanding the above, nothing in this agreement shall limit the rights of the Data Subjects under the Personal Data (Privacy) Ordinance (Cap 486) in Hong Kong. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the Personal Data (Privacy) Ordinance in Hong Kong. 14. This agreement shall be construed, interpreted and governed by the laws of Hong Kong Special Administrative Region.   For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User’s Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User’s Institution: ______________________________________ Date: ¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003409 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000421272 fq.gz 3.0 GB
EGAF50000421273 fq.gz 2.7 GB
EGAF50000421274 fq.gz 2.8 GB
EGAF50000421275 bam 47.5 MB
EGAF50000421276 bam 29.7 MB
EGAF50000421277 bam 125.1 MB
EGAF50000421278 bam 14.1 MB
EGAF50000421279 bam 30.7 MB
EGAF50000421280 bam 39.5 MB
EGAF50000421281 bam 64.4 MB
EGAF50000421282 bam 216.5 MB
EGAF50000421283 bam 378.7 MB
EGAF50000421284 bam 52.1 MB
EGAF50000421285 bam 60.7 MB
EGAF50000421286 bam 33.5 MB
EGAF50000421287 bam 34.8 MB
EGAF50000421288 bam 60.5 MB
EGAF50000421289 bam 137.7 MB
EGAF50000421290 fq.gz 3.0 GB
EGAF50000421291 fq.gz 3.3 GB
EGAF50000421292 fq.gz 2.6 GB
EGAF50000421293 fq.gz 18.1 GB
EGAF50000421294 fq.gz 16.9 GB
EGAF50000421295 fq.gz 3.2 GB
EGAF50000421296 fq.gz 19.2 GB
EGAF50000421297 fq.gz 18.0 GB
EGAF50000421298 fq.gz 2.9 GB
EGAF50000421299 fq.gz 3.8 GB
EGAF50000421300 fq.gz 3.4 GB
EGAF50000421301 fq.gz 2.9 GB
EGAF50000421302 fq.gz 21.1 GB
EGAF50000421303 fq.gz 20.1 GB
EGAF50000421304 fq.gz 23.0 GB
EGAF50000421305 fq.gz 22.0 GB
EGAF50000421306 fq.gz 5.0 GB
EGAF50000421307 fq.gz 2.4 GB
EGAF50000421308 fq.gz 3.6 GB
EGAF50000421309 fq.gz 4.4 GB
EGAF50000421310 fq.gz 4.8 GB
EGAF50000421311 fq.gz 20.6 GB
EGAF50000421312 fq.gz 3.2 GB
EGAF50000421313 fq.gz 24.9 GB
EGAF50000421314 fq.gz 21.7 GB
EGAF50000421315 fq.gz 2.9 GB
EGAF50000421316 fq.gz 2.6 GB
EGAF50000421317 fq.gz 4.5 GB
EGAF50000421318 fq.gz 24.5 GB
EGAF50000421319 fq.gz 4.0 GB
EGAF50000421320 fq.gz 4.1 GB
EGAF50000421321 fq.gz 3.6 GB
EGAF50000421322 fq.gz 3.0 GB
EGAF50000421323 fq.gz 2.9 GB
EGAF50000421324 fq.gz 3.6 GB
EGAF50000421325 fq.gz 4.2 GB
EGAF50000421326 fq.gz 26.5 GB
EGAF50000421327 fq.gz 2.2 GB
EGAF50000421328 fq.gz 18.9 GB
EGAF50000421329 fq.gz 3.6 GB
EGAF50000421330 fq.gz 3.8 GB
EGAF50000421331 fq.gz 3.4 GB
EGAF50000421332 fq.gz 3.4 GB
EGAF50000421333 fq.gz 19.9 GB
EGAF50000421334 fq.gz 3.8 GB
EGAF50000421335 fq.gz 19.1 GB
EGAF50000421336 fq.gz 4.4 GB
EGAF50000421337 fq.gz 4.4 GB
EGAF50000421338 fq.gz 3.9 GB
EGAF50000421339 fq.gz 3.7 GB
EGAF50000421340 fq.gz 4.7 GB
EGAF50000421341 fq.gz 4.3 GB
EGAF50000421342 fq.gz 17.6 GB
EGAF50000421343 fq.gz 4.2 GB
EGAF50000421344 fq.gz 20.9 GB
EGAF50000421345 fq.gz 3.7 GB
EGAF50000421346 fq.gz 3.6 GB
EGAF50000421347 fq.gz 3.6 GB
EGAF50000421348 fq.gz 4.2 GB
EGAF50000421349 fq.gz 3.5 GB
EGAF50000421350 fq.gz 3.1 GB
EGAF50000421351 fq.gz 20.6 GB
EGAF50000421352 fq.gz 20.0 GB
EGAF50000421353 fq.gz 20.5 GB
EGAF50000421354 fq.gz 22.0 GB
EGAF50000421355 fq.gz 23.2 GB
EGAF50000421356 fq.gz 3.0 GB
EGAF50000421357 fq.gz 3.8 GB
EGAF50000421358 fq.gz 2.7 GB
EGAF50000421359 fq.gz 2.4 GB
EGAF50000421360 fq.gz 18.8 GB
EGAF50000421361 fq.gz 18.8 GB
EGAF50000421362 fq.gz 24.5 GB
EGAF50000421363 fq.gz 23.1 GB
EGAF50000421364 fq.gz 18.2 GB
EGAF50000421365 fq.gz 22.4 GB
EGAF50000421366 fq.gz 21.2 GB
EGAF50000421367 fq.gz 3.5 GB
EGAF50000421368 fq.gz 3.2 GB
EGAF50000421369 fq.gz 3.5 GB
EGAF50000421370 fq.gz 2.6 GB
EGAF50000421371 fq.gz 2.3 GB
EGAF50000421372 fq.gz 3.6 GB
EGAF50000421373 fq.gz 3.2 GB
EGAF50000421374 fq.gz 2.7 GB
EGAF50000421375 fq.gz 2.0 GB
EGAF50000421376 fq.gz 1.8 GB
EGAF50000421377 fq.gz 4.4 GB
EGAF50000421378 fq.gz 3.4 GB
EGAF50000421379 fq.gz 3.0 GB
EGAF50000421380 fq.gz 4.2 GB
EGAF50000421381 fq.gz 4.0 GB
EGAF50000421382 fq.gz 3.1 GB
EGAF50000421383 fq.gz 4.6 GB
EGAF50000421384 fq.gz 3.4 GB
EGAF50000421385 fq.gz 3.4 GB
EGAF50000421386 fq.gz 4.0 GB
EGAF50000421387 fq.gz 3.6 GB
EGAF50000421388 fq.gz 3.5 GB
EGAF50000421389 fq.gz 3.9 GB
EGAF50000421390 fq.gz 3.3 GB
EGAF50000421391 fq.gz 3.0 GB
EGAF50000421392 fq.gz 4.4 GB
EGAF50000421393 fq.gz 4.4 GB
EGAF50000421394 fq.gz 4.3 GB
EGAF50000421395 fq.gz 4.2 GB
EGAF50000421396 fq.gz 3.4 GB
EGAF50000421397 fq.gz 3.9 GB
EGAF50000421398 fq.gz 3.3 GB
EGAF50000421399 fq.gz 3.9 GB
EGAF50000421400 fq.gz 3.9 GB
EGAF50000421401 fq.gz 4.5 GB
EGAF50000421402 fq.gz 3.9 GB
EGAF50000421403 fq.gz 3.9 GB
EGAF50000421404 fq.gz 4.3 GB
EGAF50000421405 fq.gz 3.8 GB
EGAF50000421406 fq.gz 3.5 GB
EGAF50000421407 fq.gz 3.9 GB
EGAF50000421408 fq.gz 3.8 GB
EGAF50000421409 fq.gz 3.7 GB
EGAF50000421410 fq.gz 3.5 GB
EGAF50000421411 fq.gz 3.4 GB
EGAF50000421412 fq.gz 3.3 GB
EGAF50000421413 fq.gz 3.2 GB
EGAF50000421414 fq.gz 3.1 GB
EGAF50000421415 fq.gz 3.9 GB
EGAF50000421416 fq.gz 3.9 GB
EGAF50000421417 fq.gz 3.6 GB
EGAF50000421418 fq.gz 3.8 GB
EGAF50000421419 fq.gz 3.7 GB
EGAF50000421420 fq.gz 3.5 GB
EGAF50000421421 fq.gz 4.0 GB
EGAF50000421422 fq.gz 3.8 GB
EGAF50000421423 fq.gz 4.5 GB
EGAF50000421424 fq.gz 3.7 GB
EGAF50000421425 fq.gz 3.6 GB
EGAF50000421426 fq.gz 4.0 GB
EGAF50000421427 fq.gz 4.0 GB
EGAF50000421428 fq.gz 4.4 GB
EGAF50000421429 fq.gz 3.8 GB
EGAF50000421430 fq.gz 4.7 GB
EGAF50000421431 fq.gz 3.8 GB
EGAF50000421432 fq.gz 3.8 GB
EGAF50000421433 fq.gz 3.9 GB
EGAF50000421434 fq.gz 4.0 GB
EGAF50000421435 fq.gz 4.0 GB
EGAF50000421436 fq.gz 3.6 GB
EGAF50000421437 fq.gz 4.6 GB
EGAF50000421438 fq.gz 3.1 GB
EGAF50000421439 fq.gz 4.0 GB
EGAF50000421440 fq.gz 4.6 GB
EGAF50000421441 fq.gz 4.0 GB
EGAF50000421442 fq.gz 4.5 GB
EGAF50000421443 fq.gz 3.6 GB
EGAF50000421444 fq.gz 2.8 GB
EGAF50000421445 fq.gz 3.8 GB
EGAF50000421446 fq.gz 3.2 GB
EGAF50000421447 fq.gz 3.7 GB
EGAF50000421448 fq.gz 3.0 GB
EGAF50000421449 fq.gz 2.9 GB
EGAF50000421450 fq.gz 3.5 GB
EGAF50000421451 fq.gz 19.9 GB
EGAF50000421452 fq.gz 23.4 GB
EGAF50000421453 fq.gz 21.5 GB
EGAF50000421454 fq.gz 20.3 GB
EGAF50000421455 fq.gz 3.1 GB
EGAF50000421456 fq.gz 23.3 GB
EGAF50000421457 fq.gz 20.2 GB
EGAF50000421458 fq.gz 17.6 GB
EGAF50000421459 fq.gz 21.4 GB
EGAF50000421460 fq.gz 20.2 GB
EGAF50000421461 fq.gz 16.6 GB
EGAF50000421462 fq.gz 25.0 GB
EGAF50000421463 fq.gz 4.3 GB
EGAF50000421464 fq.gz 4.2 GB
EGAF50000421465 fq.gz 4.0 GB
EGAF50000421466 fq.gz 20.4 GB
EGAF50000421467 fq.gz 3.9 GB
EGAF50000421468 fq.gz 3.5 GB
EGAF50000421469 fq.gz 3.8 GB
EGAF50000421470 fq.gz 4.1 GB
EGAF50000421471 fq.gz 3.6 GB
EGAF50000421472 fq.gz 3.9 GB
EGAF50000421473 fq.gz 4.2 GB
EGAF50000421474 fq.gz 4.1 GB
EGAF50000421475 fq.gz 3.1 GB
EGAF50000421476 fq.gz 4.2 GB
EGAF50000421477 fq.gz 4.1 GB
EGAF50000421478 fq.gz 23.9 GB
EGAF50000421479 fq.gz 21.9 GB
EGAF50000421480 fq.gz 22.4 GB
EGAF50000421481 fq.gz 18.8 GB
EGAF50000421482 fq.gz 21.3 GB
EGAF50000421483 fq.gz 21.6 GB
EGAF50000421484 fq.gz 3.7 GB
EGAF50000421485 fq.gz 3.3 GB
EGAF50000421486 fq.gz 3.5 GB
EGAF50000421487 fq.gz 3.2 GB
EGAF50000421488 fq.gz 3.4 GB
EGAF50000421489 fq.gz 3.8 GB
EGAF50000421490 fq.gz 3.4 GB
EGAF50000421491 fq.gz 4.1 GB
EGAF50000421492 fq.gz 4.0 GB
EGAF50000421493 fq.gz 3.0 GB
EGAF50000421494 fq.gz 3.2 GB
EGAF50000421495 fq.gz 3.9 GB
EGAF50000421496 fq.gz 4.3 GB
EGAF50000421497 fq.gz 4.2 GB
EGAF50000421498 fq.gz 4.4 GB
EGAF50000421499 fq.gz 4.3 GB
EGAF50000421500 fq.gz 3.8 GB
EGAF50000421501 fq.gz 3.8 GB
EGAF50000421502 fq.gz 3.7 GB
EGAF50000421503 fq.gz 3.5 GB
EGAF50000421504 fq.gz 3.8 GB
EGAF50000421505 fq.gz 3.8 GB
EGAF50000421506 fq.gz 4.6 GB
EGAF50000421507 fq.gz 4.6 GB
EGAF50000421508 fq.gz 4.7 GB
EGAF50000421509 fq.gz 4.6 GB
EGAF50000421510 fq.gz 3.4 GB
EGAF50000421511 fq.gz 3.3 GB
EGAF50000421512 fq.gz 4.3 GB
EGAF50000421513 fq.gz 4.3 GB
EGAF50000421514 fq.gz 3.3 GB
EGAF50000421515 fq.gz 3.2 GB
EGAF50000421516 bam 54.1 MB
EGAF50000421517 fq.gz 2.9 GB
EGAF50000421518 bam 13.6 MB
EGAF50000421519 bam 86.4 MB
EGAF50000421520 bam 87.6 MB
EGAF50000421521 bam 105.6 MB
EGAF50000421522 bam 77.5 MB
EGAF50000421523 bam 110.0 MB
EGAF50000421524 fq.gz 3.5 GB
EGAF50000421525 fq.gz 3.5 GB
254 Files (1.7 TB)