About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk WES Fastq Files for 103 Samples of Cornell-NCI DLBCL Genomic Project

Paired-read fastq files were derived from standard Illumina WES NGS sequencing for 103 DLBCL biopsy samples. This is one of three datasets associated with the multi-platform NGS sequencing efforts of the Cornell-NCI DLBCL genomic study.

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Data Access Policy for Cornell-NCI DLBCL NGS Genomic Project

Data Access Policy To access this dataset, your institution needs to sign a data access agreement with Cornell University. The Cornell DAC coordinator will email a copy of the agreement to you. Definitions Authorized Personnel: The individuals at User Institution to whom Cornell University grants access to the Data. This includes User and any other individuals at User Institution to whom User Institution subsequently grants access to the Data. Data: The managed access datasets to which User Institution has requested access. “Data” includes any dataset or database into which the Data, in whole or in part, has been aggregated, merged, or combined. Data Producers: Cornell University and the collaborators listed in Appendix I, which were responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of User, working for an institution other than User Institution. Project: The project for which User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. “Research Purposes” specifically excludes: (a) licensing or sale of Data; (b) offering a service or other product using Data; (c) commercializing a machine learning model trained on the Data; and (d) using Data in regulatory filings. User: The principal investigator for the Project. User Institution(s): The institution that has requested access to the Data. Cornell: Cornell University, through its Center for Technology Licensing, with offices at 395 Pine Tree Road, Suite 310, Ithaca, NY 14850, and at 1155 York Avenue, New York, NY 10065. Permanent email: mta-ctl@cornell.edu. Agreement 1. User Institution will use Data only for the Project as described in Appendix II, only for Research Purposes, and only within the limitations set out in Appendix I. 2. User Institution will destroy/discard Data held once it is no longer used for the Project, unless obliged to retain a copy of Data for archival purposes in conformity with audit or legal requirements. 3. User Institution will preserve, at all times, the confidentiality of Data. Without prejudice to the generality of the foregoing, User Institution will use at least the measures set out in Appendix I to protect Data. In particular, it will not use, or attempt to use, Data to compromise or otherwise infringe the confidentiality of information about Research Participants, and will limit the possibility of identification and in any research papers or publications. User Institution will not link or combine Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to User Institution or is freely available without restriction. 4. User Institution will only transfer or disclose Data, in whole or part, to the Authorized Personnel. User Institution will distribute a copy of these terms to the Authorized Personnel. User Institution will require that the Authorized Personnel comply with the terms of this agreement. Should User Institution wish to share Data with an External Collaborator, the External Collaborator must complete a separate application for access to Data. 5. User Institution will notify Cornell as soon as it becomes aware of a breach of the terms or conditions of this agreement. 6. The Data Producers, and all other parties involved in the creation, funding or protection of Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of Data; b) shall have no liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards, damages and payments made by User Institution that may arise (whether directly or indirectly) in any way whatsoever from User Institution’s use of Data or from the unavailability of, or break in access to, Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of Data. 7. User Institution will acknowledge the Data Producers and the EGA in all reports or publications resulting from the use of Data as described in the Publication Policy in Appendix III and will follow the Fort Lauderdale Guidelines (https://www.genome.gov/Pages/Research/WellcomeReport0303.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). 8. (a)User Institution will not make intellectual property claims on Data and will not use intellectual property protection in ways that would prevent or block access to, or use of, any element of Data, or conclusion drawn directly from Data. (b) Should User Institution elect to obtain intellectual property rights on downstream discoveries arising from its use of Data that comply with Paragraph 8a, User Institution will implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.ott.nih.gov/sites/default/files/documents/pdfs/70fr18413.pdf ) and the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 9. Cornell may terminate this agreement by written notice to User Institution. If this agreement terminates for any reason, User Institution will destroy any Data in its possession or control other than one copy Data retained solely for archival purpose in conformity with audit or legal requirements. 10. User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, Cornell will contact User Institution to inform it of the changes, and User Institution may elect to accept the changes or terminate the agreement. 11. If requested, User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement, including the “Minimum protection measures required” and “File access” sections of Appendix I.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001227 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000424733 fastq.gz 4.0 GB
EGAF50000424734 fastq.gz 11.0 GB
EGAF50000424735 fastq.gz 6.4 GB
EGAF50000424736 fastq.gz 9.1 GB
EGAF50000424737 fastq.gz 6.3 GB
EGAF50000424738 fastq.gz 4.2 GB
EGAF50000424739 fastq.gz 6.6 GB
EGAF50000424740 fastq.gz 4.3 GB
EGAF50000424741 fastq.gz 4.3 GB
EGAF50000424742 fastq.gz 6.4 GB
EGAF50000424743 fastq.gz 9.5 GB
EGAF50000424744 fastq.gz 6.7 GB
EGAF50000424745 fastq.gz 4.8 GB
EGAF50000424746 fastq.gz 6.6 GB
EGAF50000424747 fastq.gz 7.0 GB
EGAF50000424748 fastq.gz 4.1 GB
EGAF50000424749 fastq.gz 4.2 GB
EGAF50000424750 fastq.gz 4.4 GB
EGAF50000424751 fastq.gz 4.2 GB
EGAF50000424752 fastq.gz 3.8 GB
EGAF50000424753 fastq.gz 4.0 GB
EGAF50000424754 fastq.gz 5.6 GB
EGAF50000424755 fastq.gz 6.9 GB
EGAF50000424756 fastq.gz 4.9 GB
EGAF50000424757 fastq.gz 7.4 GB
EGAF50000424758 fastq.gz 6.8 GB
EGAF50000424759 fastq.gz 6.1 GB
EGAF50000424760 fastq.gz 4.5 GB
EGAF50000424761 fastq.gz 4.2 GB
EGAF50000424762 fastq.gz 5.5 GB
EGAF50000424763 fastq.gz 4.8 GB
EGAF50000424764 fastq.gz 3.9 GB
EGAF50000424765 fastq.gz 4.8 GB
EGAF50000424766 fastq.gz 4.0 GB
EGAF50000424767 fastq.gz 4.3 GB
EGAF50000424768 fastq.gz 4.8 GB
EGAF50000424769 fastq.gz 8.3 GB
EGAF50000424770 fastq.gz 4.4 GB
EGAF50000424771 fastq.gz 4.5 GB
EGAF50000424772 fastq.gz 6.4 GB
EGAF50000424773 fastq.gz 3.9 GB
EGAF50000424774 fastq.gz 9.6 GB
EGAF50000424775 fastq.gz 5.0 GB
EGAF50000424776 fastq.gz 5.7 GB
EGAF50000424777 fastq.gz 6.0 GB
EGAF50000424778 fastq.gz 4.2 GB
EGAF50000424779 fastq.gz 5.4 GB
EGAF50000424780 fastq.gz 3.8 GB
EGAF50000424781 fastq.gz 4.1 GB
EGAF50000424782 fastq.gz 13.7 GB
EGAF50000424783 fastq.gz 3.7 GB
EGAF50000424784 fastq.gz 4.4 GB
EGAF50000424785 fastq.gz 4.5 GB
EGAF50000424786 fastq.gz 4.8 GB
EGAF50000424787 fastq.gz 10.1 GB
EGAF50000424788 fastq.gz 5.0 GB
EGAF50000424789 fastq.gz 4.8 GB
EGAF50000424790 fastq.gz 8.7 GB
EGAF50000424791 fastq.gz 9.0 GB
EGAF50000424792 fastq.gz 4.6 GB
EGAF50000424793 fastq.gz 8.7 GB
EGAF50000424794 fastq.gz 5.1 GB
EGAF50000424795 fastq.gz 4.7 GB
EGAF50000424796 fastq.gz 4.8 GB
EGAF50000424797 fastq.gz 6.5 GB
EGAF50000424798 fastq.gz 4.0 GB
EGAF50000424799 fastq.gz 5.6 GB
EGAF50000424800 fastq.gz 5.2 GB
EGAF50000424801 fastq.gz 5.6 GB
EGAF50000424802 fastq.gz 4.4 GB
EGAF50000424803 fastq.gz 4.8 GB
EGAF50000424804 fastq.gz 4.1 GB
EGAF50000424805 fastq.gz 6.4 GB
EGAF50000424806 fastq.gz 4.8 GB
EGAF50000424807 fastq.gz 3.7 GB
EGAF50000424808 fastq.gz 11.4 GB
EGAF50000424809 fastq.gz 5.3 GB
EGAF50000424810 fastq.gz 4.6 GB
EGAF50000424811 fastq.gz 5.6 GB
EGAF50000424812 fastq.gz 4.6 GB
EGAF50000424813 fastq.gz 4.1 GB
EGAF50000424814 fastq.gz 5.0 GB
EGAF50000424815 fastq.gz 4.0 GB
EGAF50000424816 fastq.gz 4.1 GB
EGAF50000424817 fastq.gz 10.6 GB
EGAF50000424818 fastq.gz 8.1 GB
EGAF50000424819 fastq.gz 4.1 GB
EGAF50000424820 fastq.gz 5.2 GB
EGAF50000424821 fastq.gz 5.0 GB
EGAF50000424822 fastq.gz 4.1 GB
EGAF50000424823 fastq.gz 4.7 GB
EGAF50000424824 fastq.gz 4.7 GB
EGAF50000424825 fastq.gz 4.9 GB
EGAF50000424826 fastq.gz 5.8 GB
EGAF50000424827 fastq.gz 6.4 GB
EGAF50000424828 fastq.gz 6.1 GB
EGAF50000424829 fastq.gz 10.4 GB
EGAF50000424830 fastq.gz 4.2 GB
EGAF50000424831 fastq.gz 4.2 GB
EGAF50000424832 fastq.gz 6.0 GB
EGAF50000424833 fastq.gz 4.5 GB
EGAF50000424834 fastq.gz 7.1 GB
EGAF50000424835 fastq.gz 6.1 GB
EGAF50000424836 fastq.gz 4.4 GB
EGAF50000424837 fastq.gz 4.6 GB
EGAF50000424838 fastq.gz 3.9 GB
EGAF50000424839 fastq.gz 5.0 GB
EGAF50000424840 fastq.gz 3.9 GB
EGAF50000424841 fastq.gz 5.2 GB
EGAF50000424842 fastq.gz 5.7 GB
EGAF50000424843 fastq.gz 9.6 GB
EGAF50000424844 fastq.gz 11.1 GB
EGAF50000424845 fastq.gz 6.5 GB
EGAF50000424846 fastq.gz 9.0 GB
EGAF50000424847 fastq.gz 5.0 GB
EGAF50000424848 fastq.gz 5.1 GB
EGAF50000424849 fastq.gz 6.6 GB
EGAF50000424850 fastq.gz 6.8 GB
EGAF50000424851 fastq.gz 7.0 GB
EGAF50000424852 fastq.gz 6.7 GB
EGAF50000424853 fastq.gz 9.6 GB
EGAF50000424854 fastq.gz 9.2 GB
EGAF50000424855 fastq.gz 6.4 GB
EGAF50000424856 fastq.gz 4.0 GB
EGAF50000424857 fastq.gz 4.2 GB
EGAF50000424858 fastq.gz 5.1 GB
EGAF50000424859 fastq.gz 5.5 GB
EGAF50000424860 fastq.gz 4.3 GB
EGAF50000424861 fastq.gz 4.5 GB
EGAF50000424862 fastq.gz 4.7 GB
EGAF50000424863 fastq.gz 9.0 GB
EGAF50000424864 fastq.gz 9.2 GB
EGAF50000424865 fastq.gz 3.8 GB
EGAF50000424866 fastq.gz 6.5 GB
EGAF50000424867 fastq.gz 6.7 GB
EGAF50000424868 fastq.gz 11.0 GB
EGAF50000424869 fastq.gz 11.8 GB
EGAF50000424870 fastq.gz 5.7 GB
EGAF50000424871 fastq.gz 5.8 GB
EGAF50000424872 fastq.gz 9.9 GB
EGAF50000424873 fastq.gz 4.4 GB
EGAF50000424874 fastq.gz 9.1 GB
EGAF50000424875 fastq.gz 10.5 GB
EGAF50000424876 fastq.gz 6.4 GB
EGAF50000424877 fastq.gz 4.7 GB
EGAF50000424878 fastq.gz 4.9 GB
EGAF50000424879 fastq.gz 4.1 GB
EGAF50000424880 fastq.gz 5.2 GB
EGAF50000424881 fastq.gz 4.9 GB
EGAF50000424882 fastq.gz 4.2 GB
EGAF50000424883 fastq.gz 4.7 GB
EGAF50000424884 fastq.gz 4.8 GB
EGAF50000424885 fastq.gz 5.0 GB
EGAF50000424886 fastq.gz 4.4 GB
EGAF50000424887 fastq.gz 4.7 GB
EGAF50000424888 fastq.gz 4.5 GB
EGAF50000424889 fastq.gz 4.5 GB
EGAF50000424890 fastq.gz 4.8 GB
EGAF50000424891 fastq.gz 4.9 GB
EGAF50000424892 fastq.gz 4.7 GB
EGAF50000424893 fastq.gz 4.9 GB
EGAF50000424894 fastq.gz 4.4 GB
EGAF50000424895 fastq.gz 4.8 GB
EGAF50000424896 fastq.gz 12.1 GB
EGAF50000424897 fastq.gz 4.5 GB
EGAF50000424898 fastq.gz 4.6 GB
EGAF50000424899 fastq.gz 3.7 GB
EGAF50000424900 fastq.gz 3.9 GB
EGAF50000424901 fastq.gz 3.6 GB
EGAF50000424902 fastq.gz 3.9 GB
EGAF50000424903 fastq.gz 4.8 GB
EGAF50000424904 fastq.gz 4.0 GB
EGAF50000424905 fastq.gz 4.2 GB
EGAF50000424906 fastq.gz 4.3 GB
EGAF50000424907 fastq.gz 5.2 GB
EGAF50000424908 fastq.gz 4.0 GB
EGAF50000424909 fastq.gz 4.2 GB
EGAF50000424910 fastq.gz 4.5 GB
EGAF50000424911 fastq.gz 3.9 GB
EGAF50000424912 fastq.gz 4.1 GB
EGAF50000424913 fastq.gz 4.5 GB
EGAF50000424914 fastq.gz 6.4 GB
EGAF50000424915 fastq.gz 4.0 GB
EGAF50000424916 fastq.gz 5.9 GB
EGAF50000424917 fastq.gz 5.2 GB
EGAF50000424918 fastq.gz 11.8 GB
EGAF50000424919 fastq.gz 5.2 GB
EGAF50000424920 fastq.gz 4.0 GB
EGAF50000424921 fastq.gz 4.2 GB
EGAF50000424922 fastq.gz 4.7 GB
EGAF50000424923 fastq.gz 4.2 GB
EGAF50000424924 fastq.gz 5.5 GB
EGAF50000424925 fastq.gz 5.0 GB
EGAF50000424926 fastq.gz 3.8 GB
EGAF50000424927 fastq.gz 8.8 GB
EGAF50000424928 fastq.gz 9.1 GB
EGAF50000424929 fastq.gz 9.5 GB
EGAF50000424930 fastq.gz 6.8 GB
EGAF50000424931 fastq.gz 7.1 GB
EGAF50000424932 fastq.gz 9.9 GB
EGAF50000424933 fastq.gz 8.8 GB
EGAF50000424934 fastq.gz 6.8 GB
EGAF50000424935 fastq.gz 10.0 GB
EGAF50000424936 fastq.gz 9.3 GB
EGAF50000424937 fastq.gz 9.8 GB
EGAF50000424938 fastq.gz 6.2 GB
206 Files (1.2 TB)