SIA Subtyping TSO500 (Targetted Sequencing)
Associated with Molecular classification of small intestinal adenocarcinomas. TSO500 Targetted sequencing panel generated 292 .fastq files from 145 samples (primary and recurrent small intestine adenocarcinomas as well as normal samples) from 133 patients. TruSight Oncology 500 (TSO500; Illumina, San Diego, USA) high-throughput assays were run on genomic DNA samples through next-generation sequencing (NGS) on Illumina’s NovaSeq6000 at GenomeScan.
- 25/11/2025
- 145 samples
- DAC: EGAC50000000663
- Technology: Illumina NovaSeq 6000
Data originating from patient samples
The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1. Reference number for the dataset 2. Full legal name and address of university/institution 3. Name(s) of the Principle Investigator who will use the data: 4. Name(s) and job title(s) of any other investigators who will use the data: 5. Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6. How will the data be stored and where will it be stored? 7. What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8. Please provide a brief justification or rationale for the proposed study (max 250 words): 9. Please provide a brief description of planned data analyses (max 250 words): 10. Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001238 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000425233 | fastq.gz | 5.8 GB |
|
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| EGAF50000425234 | fastq.gz | 5.7 GB |
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| EGAF50000425235 | fastq.gz | 4.6 GB |
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| EGAF50000425236 | fastq.gz | 4.4 GB |
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| EGAF50000425237 | fastq.gz | 4.6 GB |
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| EGAF50000425238 | fastq.gz | 4.6 GB |
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| EGAF50000425239 | fastq.gz | 6.4 GB |
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| EGAF50000425240 | fastq.gz | 6.6 GB |
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| EGAF50000425241 | fastq.gz | 5.3 GB |
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| EGAF50000425242 | fastq.gz | 5.4 GB |
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| EGAF50000425243 | fastq.gz | 4.6 GB |
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| EGAF50000425244 | fastq.gz | 4.9 GB |
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| EGAF50000425245 | fastq.gz | 5.6 GB |
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| EGAF50000425246 | fastq.gz | 5.7 GB |
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| EGAF50000425247 | fastq.gz | 5.2 GB |
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| EGAF50000425248 | fastq.gz | 5.5 GB |
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| EGAF50000425249 | fastq.gz | 4.5 GB |
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| EGAF50000425250 | fastq.gz | 5.4 GB |
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| EGAF50000425251 | fastq.gz | 3.6 GB |
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| EGAF50000425252 | fastq.gz | 4.1 GB |
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| EGAF50000425253 | fastq.gz | 4.0 GB |
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| EGAF50000425254 | fastq.gz | 3.2 GB |
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| EGAF50000425255 | fastq.gz | 3.2 GB |
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| EGAF50000425256 | fastq.gz | 3.5 GB |
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| EGAF50000425257 | fastq.gz | 3.5 GB |
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| EGAF50000425258 | fastq.gz | 3.5 GB |
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| EGAF50000425259 | fastq.gz | 3.6 GB |
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| EGAF50000425260 | fastq.gz | 3.2 GB |
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| EGAF50000425261 | fastq.gz | 3.2 GB |
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| EGAF50000425262 | fastq.gz | 4.2 GB |
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| EGAF50000425263 | fastq.gz | 4.4 GB |
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| EGAF50000425264 | fastq.gz | 3.5 GB |
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| EGAF50000425265 | fastq.gz | 3.6 GB |
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| EGAF50000425266 | fastq.gz | 4.4 GB |
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| EGAF50000425267 | fastq.gz | 4.7 GB |
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| EGAF50000425268 | fastq.gz | 3.2 GB |
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| EGAF50000425269 | fastq.gz | 3.3 GB |
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| EGAF50000425270 | fastq.gz | 3.5 GB |
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| EGAF50000425271 | fastq.gz | 3.7 GB |
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| EGAF50000425272 | fastq.gz | 3.8 GB |
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| EGAF50000425273 | fastq.gz | 3.8 GB |
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| EGAF50000425274 | fastq.gz | 3.8 GB |
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| EGAF50000425275 | fastq.gz | 3.7 GB |
|
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| EGAF50000425276 | fastq.gz | 3.5 GB |
|
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| EGAF50000425277 | fastq.gz | 3.5 GB |
|
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| EGAF50000425278 | fastq.gz | 7.4 GB |
|
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| EGAF50000425279 | fastq.gz | 3.6 GB |
|
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| EGAF50000425304 | fastq.gz | 2.6 GB |
|
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| EGAF50000425306 | fastq.gz | 3.7 GB |
|
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| EGAF50000425307 | fastq.gz | 3.7 GB |
|
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| EGAF50000425310 | fastq.gz | 2.4 GB |
|
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| EGAF50000425311 | fastq.gz | 2.9 GB |
|
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| EGAF50000425312 | fastq.gz | 2.2 GB |
|
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| EGAF50000425320 | fastq.gz | 3.1 GB |
|
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| EGAF50000425321 | fastq.gz | 3.2 GB |
|
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| EGAF50000425349 | fastq.gz | 3.6 GB |
|
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| EGAF50000425350 | fastq.gz | 3.8 GB |
|
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| EGAF50000425351 | fastq.gz | 3.4 GB |
|
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| EGAF50000425353 | fastq.gz | 3.7 GB |
|
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| EGAF50000425373 | fastq.gz | 5.4 GB |
|
|
| EGAF50000425374 | fastq.gz | 4.8 GB |
|
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| EGAF50000425375 | fastq.gz | 4.8 GB |
|
|
| EGAF50000425376 | fastq.gz | 4.7 GB |
|
|
| EGAF50000425377 | fastq.gz | 4.6 GB |
|
|
| EGAF50000425378 | fastq.gz | 4.6 GB |
|
|
| EGAF50000425379 | fastq.gz | 5.2 GB |
|
|
| EGAF50000425380 | fastq.gz | 4.5 GB |
|
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| EGAF50000425381 | fastq.gz | 3.6 GB |
|
|
| EGAF50000425382 | fastq.gz | 5.5 GB |
|
|
| EGAF50000425383 | fastq.gz | 4.5 GB |
|
|
| EGAF50000425384 | fastq.gz | 5.1 GB |
|
|
| EGAF50000425385 | fastq.gz | 5.1 GB |
|
|
| EGAF50000425386 | fastq.gz | 5.7 GB |
|
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| EGAF50000425387 | fastq.gz | 4.9 GB |
|
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| EGAF50000425388 | fastq.gz | 5.3 GB |
|
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| EGAF50000425389 | fastq.gz | 4.5 GB |
|
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| EGAF50000425397 | fastq.gz | 4.6 GB |
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| EGAF50000425400 | fastq.gz | 3.3 GB |
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| EGAF50000425401 | fastq.gz | 3.8 GB |
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| EGAF50000425405 | fastq.gz | 3.9 GB |
|
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| EGAF50000425406 | fastq.gz | 3.8 GB |
|
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| EGAF50000425408 | fastq.gz | 3.7 GB |
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| EGAF50000425409 | fastq.gz | 3.7 GB |
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| EGAF50000425412 | fastq.gz | 3.9 GB |
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| EGAF50000425413 | fastq.gz | 3.9 GB |
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| EGAF50000425414 | fastq.gz | 3.5 GB |
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| EGAF50000425415 | fastq.gz | 3.0 GB |
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| EGAF50000425416 | fastq.gz | 3.7 GB |
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| EGAF50000425417 | fastq.gz | 3.8 GB |
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| EGAF50000425418 | fastq.gz | 3.4 GB |
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| EGAF50000425419 | fastq.gz | 3.6 GB |
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| EGAF50000425420 | fastq.gz | 3.5 GB |
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| EGAF50000425421 | fastq.gz | 3.9 GB |
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| EGAF50000425422 | fastq.gz | 3.9 GB |
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| EGAF50000425423 | fastq.gz | 3.9 GB |
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| EGAF50000425424 | fastq.gz | 3.9 GB |
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| EGAF50000425425 | fastq.gz | 2.5 GB |
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| EGAF50000425426 | fastq.gz | 2.4 GB |
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| EGAF50000425427 | fastq.gz | 2.5 GB |
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| EGAF50000425428 | fastq.gz | 2.9 GB |
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| EGAF50000425429 | fastq.gz | 2.4 GB |
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| EGAF50000425430 | fastq.gz | 2.5 GB |
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| EGAF50000425431 | fastq.gz | 2.5 GB |
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| EGAF50000425432 | fastq.gz | 2.6 GB |
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| EGAF50000425433 | fastq.gz | 2.4 GB |
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| EGAF50000425434 | fastq.gz | 2.4 GB |
|
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| EGAF50000425435 | fastq.gz | 2.9 GB |
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| EGAF50000425436 | fastq.gz | 2.1 GB |
|
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| EGAF50000425437 | fastq.gz | 2.6 GB |
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| EGAF50000425438 | fastq.gz | 2.7 GB |
|
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| EGAF50000425439 | fastq.gz | 2.5 GB |
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| EGAF50000425440 | fastq.gz | 2.7 GB |
|
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| EGAF50000425441 | fastq.gz | 2.5 GB |
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| EGAF50000425442 | fastq.gz | 2.4 GB |
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| EGAF50000425443 | fastq.gz | 2.4 GB |
|
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| EGAF50000425444 | fastq.gz | 2.5 GB |
|
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| EGAF50000425445 | fastq.gz | 2.6 GB |
|
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| EGAF50000425446 | fastq.gz | 3.5 GB |
|
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| EGAF50000425447 | fastq.gz | 3.5 GB |
|
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| EGAF50000425531 | fastq.gz | 7.1 GB |
|
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| EGAF50000425532 | fastq.gz | 3.6 GB |
|
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| EGAF50000425533 | fastq.gz | 3.4 GB |
|
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| EGAF50000425534 | fastq.gz | 3.5 GB |
|
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| EGAF50000425535 | fastq.gz | 3.6 GB |
|
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| EGAF50000425536 | fastq.gz | 4.4 GB |
|
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| EGAF50000425537 | fastq.gz | 3.8 GB |
|
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| EGAF50000425538 | fastq.gz | 3.3 GB |
|
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| EGAF50000425539 | fastq.gz | 3.3 GB |
|
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| EGAF50000425540 | fastq.gz | 3.4 GB |
|
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| EGAF50000425541 | fastq.gz | 3.6 GB |
|
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| EGAF50000425542 | fastq.gz | 3.8 GB |
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| EGAF50000425543 | fastq.gz | 3.9 GB |
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| EGAF50000425544 | fastq.gz | 3.5 GB |
|
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| EGAF50000425545 | fastq.gz | 3.6 GB |
|
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| EGAF50000425546 | fastq.gz | 3.7 GB |
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| EGAF50000425547 | fastq.gz | 3.6 GB |
|
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| EGAF50000425548 | fastq.gz | 3.6 GB |
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| EGAF50000425549 | fastq.gz | 3.0 GB |
|
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| EGAF50000425550 | fastq.gz | 3.1 GB |
|
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| EGAF50000425551 | fastq.gz | 2.8 GB |
|
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| EGAF50000425552 | fastq.gz | 3.0 GB |
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| EGAF50000425553 | fastq.gz | 3.8 GB |
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| EGAF50000425554 | fastq.gz | 4.0 GB |
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| EGAF50000425555 | fastq.gz | 3.5 GB |
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| EGAF50000425556 | fastq.gz | 3.7 GB |
|
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| EGAF50000425557 | fastq.gz | 3.7 GB |
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| EGAF50000425558 | fastq.gz | 3.6 GB |
|
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| EGAF50000425559 | fastq.gz | 3.5 GB |
|
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| EGAF50000425560 | fastq.gz | 3.6 GB |
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| EGAF50000425565 | fastq.gz | 3.5 GB |
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| EGAF50000425568 | fastq.gz | 3.4 GB |
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| EGAF50000425571 | fastq.gz | 3.2 GB |
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| EGAF50000425572 | fastq.gz | 3.3 GB |
|
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| EGAF50000425573 | fastq.gz | 3.4 GB |
|
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| EGAF50000425574 | fastq.gz | 3.5 GB |
|
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| EGAF50000425576 | fastq.gz | 3.8 GB |
|
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| EGAF50000425577 | fastq.gz | 3.6 GB |
|
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| EGAF50000425634 | fastq.gz | 4.5 GB |
|
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| EGAF50000425750 | fastq.gz | 4.4 GB |
|
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| EGAF50000425751 | fastq.gz | 4.4 GB |
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| EGAF50000425752 | fastq.gz | 4.6 GB |
|
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| EGAF50000425762 | fastq.gz | 2.7 GB |
|
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| EGAF50000425763 | fastq.gz | 2.9 GB |
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| EGAF50000425775 | fastq.gz | 3.6 GB |
|
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| EGAF50000425776 | fastq.gz | 3.3 GB |
|
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| EGAF50000425798 | fastq.gz | 5.8 GB |
|
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| EGAF50000425799 | fastq.gz | 4.6 GB |
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| EGAF50000425800 | fastq.gz | 5.6 GB |
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| EGAF50000425801 | fastq.gz | 5.8 GB |
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| EGAF50000425802 | fastq.gz | 5.0 GB |
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| EGAF50000425803 | fastq.gz | 5.3 GB |
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| EGAF50000425804 | fastq.gz | 5.3 GB |
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| EGAF50000425805 | fastq.gz | 5.2 GB |
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| EGAF50000425806 | fastq.gz | 5.2 GB |
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| EGAF50000425807 | fastq.gz | 4.5 GB |
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| EGAF50000425808 | fastq.gz | 3.7 GB |
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| EGAF50000425809 | fastq.gz | 5.4 GB |
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| EGAF50000425810 | fastq.gz | 3.5 GB |
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| EGAF50000425811 | fastq.gz | 3.2 GB |
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| EGAF50000425815 | fastq.gz | 3.7 GB |
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| EGAF50000425820 | fastq.gz | 5.7 GB |
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| EGAF50000425822 | fastq.gz | 3.1 GB |
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| EGAF50000425823 | fastq.gz | 3.3 GB |
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| EGAF50000425824 | fastq.gz | 3.4 GB |
|
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| EGAF50000425825 | fastq.gz | 3.3 GB |
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| EGAF50000425835 | fastq.gz | 3.7 GB |
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| EGAF50000425836 | fastq.gz | 3.5 GB |
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| EGAF50000425837 | fastq.gz | 3.9 GB |
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| EGAF50000425838 | fastq.gz | 3.5 GB |
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| EGAF50000425839 | fastq.gz | 3.6 GB |
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| EGAF50000425840 | fastq.gz | 3.3 GB |
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| EGAF50000425841 | fastq.gz | 3.5 GB |
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| EGAF50000425842 | fastq.gz | 3.9 GB |
|
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| EGAF50000425843 | fastq.gz | 3.9 GB |
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| EGAF50000425844 | fastq.gz | 4.3 GB |
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| EGAF50000425845 | fastq.gz | 3.7 GB |
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| EGAF50000425846 | fastq.gz | 3.2 GB |
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| EGAF50000425847 | fastq.gz | 3.4 GB |
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| EGAF50000425848 | fastq.gz | 3.3 GB |
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| EGAF50000425849 | fastq.gz | 3.4 GB |
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| EGAF50000425850 | fastq.gz | 3.2 GB |
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| EGAF50000425851 | fastq.gz | 3.2 GB |
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| EGAF50000425852 | fastq.gz | 3.6 GB |
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| EGAF50000425853 | fastq.gz | 3.1 GB |
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| EGAF50000425854 | fastq.gz | 3.1 GB |
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| EGAF50000425855 | fastq.gz | 3.4 GB |
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| EGAF50000425856 | fastq.gz | 3.3 GB |
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| EGAF50000425857 | fastq.gz | 4.1 GB |
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| EGAF50000425858 | fastq.gz | 3.9 GB |
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| EGAF50000425859 | fastq.gz | 3.4 GB |
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| EGAF50000425860 | fastq.gz | 3.4 GB |
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| EGAF50000425861 | fastq.gz | 4.0 GB |
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| EGAF50000425862 | fastq.gz | 4.0 GB |
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| EGAF50000425863 | fastq.gz | 3.8 GB |
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| EGAF50000425864 | fastq.gz | 3.9 GB |
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| EGAF50000425865 | fastq.gz | 4.0 GB |
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| EGAF50000425866 | fastq.gz | 3.5 GB |
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| EGAF50000425867 | fastq.gz | 3.6 GB |
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| EGAF50000425868 | fastq.gz | 3.7 GB |
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| EGAF50000425869 | fastq.gz | 3.8 GB |
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| EGAF50000425870 | fastq.gz | 3.7 GB |
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| EGAF50000425871 | fastq.gz | 3.9 GB |
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| EGAF50000425872 | fastq.gz | 3.7 GB |
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| EGAF50000425873 | fastq.gz | 3.8 GB |
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| EGAF50000425874 | fastq.gz | 3.5 GB |
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| EGAF50000425875 | fastq.gz | 3.7 GB |
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| EGAF50000425876 | fastq.gz | 3.8 GB |
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| EGAF50000425877 | fastq.gz | 3.8 GB |
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| EGAF50000425878 | fastq.gz | 3.5 GB |
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| EGAF50000425879 | fastq.gz | 3.3 GB |
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| EGAF50000425880 | fastq.gz | 3.8 GB |
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| EGAF50000425881 | fastq.gz | 3.7 GB |
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| EGAF50000425882 | fastq.gz | 2.8 GB |
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| EGAF50000425883 | fastq.gz | 2.9 GB |
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| EGAF50000425884 | fastq.gz | 3.2 GB |
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| EGAF50000425885 | fastq.gz | 3.3 GB |
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| EGAF50000425886 | fastq.gz | 3.4 GB |
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| EGAF50000425887 | fastq.gz | 3.4 GB |
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| EGAF50000425888 | fastq.gz | 3.3 GB |
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| EGAF50000425889 | fastq.gz | 3.5 GB |
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| EGAF50000425890 | fastq.gz | 3.6 GB |
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| EGAF50000425891 | fastq.gz | 3.6 GB |
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| EGAF50000425892 | fastq.gz | 3.7 GB |
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| EGAF50000425893 | fastq.gz | 3.9 GB |
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| EGAF50000425894 | fastq.gz | 2.5 GB |
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| EGAF50000425895 | fastq.gz | 2.6 GB |
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| EGAF50000425896 | fastq.gz | 2.9 GB |
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| EGAF50000425897 | fastq.gz | 2.5 GB |
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| EGAF50000425898 | fastq.gz | 2.6 GB |
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| EGAF50000425899 | fastq.gz | 2.6 GB |
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| EGAF50000425900 | fastq.gz | 2.8 GB |
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| EGAF50000425901 | fastq.gz | 2.4 GB |
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| EGAF50000425902 | fastq.gz | 2.6 GB |
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| EGAF50000425903 | fastq.gz | 2.9 GB |
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| EGAF50000425904 | fastq.gz | 2.7 GB |
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| EGAF50000425905 | fastq.gz | 2.8 GB |
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| EGAF50000425906 | fastq.gz | 2.5 GB |
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| EGAF50000425907 | fastq.gz | 2.3 GB |
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| EGAF50000425908 | fastq.gz | 2.5 GB |
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| EGAF50000425909 | fastq.gz | 2.4 GB |
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| EGAF50000425910 | fastq.gz | 2.4 GB |
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| EGAF50000425911 | fastq.gz | 3.0 GB |
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| EGAF50000425912 | fastq.gz | 3.1 GB |
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| EGAF50000425913 | fastq.gz | 3.4 GB |
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| EGAF50000425914 | fastq.gz | 3.5 GB |
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| EGAF50000425915 | fastq.gz | 3.1 GB |
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| EGAF50000425916 | fastq.gz | 3.1 GB |
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| EGAF50000425917 | fastq.gz | 2.5 GB |
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| EGAF50000425918 | fastq.gz | 2.5 GB |
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| EGAF50000425919 | fastq.gz | 3.3 GB |
|
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| EGAF50000425920 | fastq.gz | 3.4 GB |
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| EGAF50000425921 | fastq.gz | 2.7 GB |
|
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| EGAF50000425922 | fastq.gz | 2.7 GB |
|
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| EGAF50000425923 | fastq.gz | 2.7 GB |
|
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| EGAF50000426413 | fastq.gz | 3.5 GB |
|
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| EGAF50000426414 | fastq.gz | 3.6 GB |
|
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| EGAF50000426415 | fastq.gz | 3.6 GB |
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| EGAF50000426425 | fastq.gz | 4.0 GB |
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| EGAF50000426445 | fastq.gz | 2.9 GB |
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| EGAF50000426482 | fastq.gz | 5.5 GB |
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| EGAF50000426483 | fastq.gz | 4.8 GB |
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| EGAF50000426484 | fastq.gz | 3.8 GB |
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| EGAF50000426485 | fastq.gz | 2.8 GB |
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| EGAF50000426486 | fastq.gz | 3.7 GB |
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| EGAF50000426487 | fastq.gz | 4.5 GB |
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| EGAF50000426488 | fastq.gz | 481.3 MB |
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| EGAF50000426556 | fastq.gz | 3.6 GB |
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| EGAF50000426557 | fastq.gz | 4.0 GB |
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| EGAF50000426558 | fastq.gz | 4.2 GB |
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| EGAF50000426559 | fastq.gz | 3.6 GB |
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| EGAF50000426560 | fastq.gz | 3.8 GB |
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| EGAF50000426562 | fastq.gz | 2.9 GB |
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| 292 Files (1.1 TB) | ||||