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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA-seq data of proliferative vitreoretinal diseases and healthy human retinal pigment epithelium

This dataset contains RNA-seq data generated from surgical specimens of proliferative vitreoretinal diseases (including proliferative vitreoretinopathy and epiretinal membranes) and from retinal pigment epithelial cells isolated from post-mortem donor eyes. Total RNA was extracted and cDNA libraries were prepared using the Ovation Solo RNA-seq Kit (Tecan). Sequencing was performed on the Illumina NovaSeq 6000 platform. Raw FASTQ files are included to enable downstream analyses such as gene expression profiling.

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Policy – RNA-seq data of proliferative vitreoretinal diseases and healthy human retinal pigment epithelium

This policy governs access to RNA-seq data generated from: – Membranes from proliferative vitreoretinal diseases, including proliferative vitreoretinopathy and epiretinal membranes. – Retinal pigment epithelial cells isolated from healthy ocular globes obtained from deceased donors. Collection and analysis of these residual human materials were conducted with the approval of the ULB-Erasme Ethical Committee (P2019/066 A2022/136) and of the Eye Bank (CHU Liège), with no need for informed consent in compliance with Belgian law. All data are pseudonymised and handled in compliance with applicable data protection regulations, including the General Data Protection Regulation (GDPR). Access will be granted only to qualified researchers whose proposed use of the data is consistent with the participants’ rights, the granted ethical approvals, and relevant legal requirements.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001253 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000428974 fastq.gz 1.7 GB
EGAF50000428975 fastq.gz 1.1 GB
EGAF50000428976 fastq.gz 1.1 GB
EGAF50000428977 fastq.gz 3.3 GB
EGAF50000428978 fastq.gz 1.3 GB
EGAF50000428979 fastq.gz 1.2 GB
EGAF50000428980 fastq.gz 1.6 GB
EGAF50000428981 fastq.gz 1.2 GB
EGAF50000428982 fastq.gz 2.4 GB
EGAF50000428983 fastq.gz 1.9 GB
EGAF50000428984 fastq.gz 2.3 GB
EGAF50000428985 fastq.gz 1.8 GB
EGAF50000428986 fastq.gz 1.7 GB
EGAF50000428987 fastq.gz 2.5 GB
EGAF50000428988 fastq.gz 1.8 GB
EGAF50000428989 fastq.gz 1.7 GB
EGAF50000428990 fastq.gz 1.3 GB
EGAF50000428991 fastq.gz 1.3 GB
EGAF50000428992 fastq.gz 1.5 GB
EGAF50000428993 fastq.gz 2.0 GB
EGAF50000428994 fastq.gz 1.9 GB
EGAF50000428995 fastq.gz 2.1 GB
EGAF50000428996 fastq.gz 2.0 GB
EGAF50000428997 fastq.gz 1.6 GB
EGAF50000428998 fastq.gz 1.7 GB
EGAF50000428999 fastq.gz 1.8 GB
EGAF50000429000 fastq.gz 2.1 GB
EGAF50000429001 fastq.gz 1.4 GB
EGAF50000429002 fastq.gz 974.7 MB
EGAF50000429003 fastq.gz 1.0 GB
EGAF50000429004 fastq.gz 2.0 GB
EGAF50000429005 fastq.gz 2.2 GB
EGAF50000429006 fastq.gz 1.3 GB
EGAF50000429007 fastq.gz 1.4 GB
EGAF50000429008 fastq.gz 1.3 GB
EGAF50000429009 fastq.gz 3.0 GB
EGAF50000429010 fastq.gz 3.2 GB
EGAF50000429011 fastq.gz 2.3 GB
EGAF50000429012 fastq.gz 2.1 GB
EGAF50000429013 fastq.gz 2.3 GB
EGAF50000429014 fastq.gz 2.0 GB
EGAF50000429015 fastq.gz 2.7 GB
EGAF50000429016 fastq.gz 1.5 GB
EGAF50000429017 fastq.gz 1.7 GB
EGAF50000429018 fastq.gz 1.2 GB
EGAF50000429019 fastq.gz 2.2 GB
EGAF50000429020 fastq.gz 2.4 GB
EGAF50000429021 fastq.gz 1.2 GB
EGAF50000429022 fastq.gz 1.5 GB
EGAF50000429023 fastq.gz 1.0 GB
EGAF50000429024 fastq.gz 1.1 GB
EGAF50000429025 fastq.gz 2.0 GB
EGAF50000429026 fastq.gz 2.0 GB
EGAF50000429027 fastq.gz 2.3 GB
EGAF50000429028 fastq.gz 1.5 GB
EGAF50000429029 fastq.gz 1.6 GB
EGAF50000429030 fastq.gz 1.0 GB
EGAF50000429031 fastq.gz 2.5 GB
EGAF50000429032 fastq.gz 1.5 GB
EGAF50000429033 fastq.gz 1.4 GB
EGAF50000429034 fastq.gz 1.2 GB
EGAF50000429035 fastq.gz 1.3 GB
EGAF50000429036 fastq.gz 1.8 GB
EGAF50000429037 fastq.gz 1.9 GB
EGAF50000429038 fastq.gz 1.3 GB
EGAF50000429039 fastq.gz 1.0 GB
EGAF50000429040 fastq.gz 2.9 GB
EGAF50000429041 fastq.gz 1.2 GB
EGAF50000429042 fastq.gz 2.0 GB
EGAF50000429043 fastq.gz 1.2 GB
EGAF50000429044 fastq.gz 1.2 GB
EGAF50000429045 fastq.gz 1.3 GB
EGAF50000429046 fastq.gz 2.4 GB
EGAF50000429047 fastq.gz 1.8 GB
EGAF50000429048 fastq.gz 1.8 GB
EGAF50000429049 fastq.gz 1.1 GB
EGAF50000429050 fastq.gz 1.1 GB
EGAF50000429051 fastq.gz 2.2 GB
EGAF50000429052 fastq.gz 2.5 GB
EGAF50000429053 fastq.gz 1.6 GB
EGAF50000429054 fastq.gz 2.2 GB
EGAF50000429055 fastq.gz 1.8 GB
EGAF50000429056 fastq.gz 1.8 GB
EGAF50000429057 fastq.gz 1.5 GB
EGAF50000429058 fastq.gz 1.8 GB
EGAF50000429059 fastq.gz 2.1 GB
EGAF50000429060 fastq.gz 2.0 GB
EGAF50000429061 fastq.gz 2.1 GB
EGAF50000429062 fastq.gz 2.2 GB
EGAF50000429063 fastq.gz 2.3 GB
EGAF50000429064 fastq.gz 1.4 GB
EGAF50000429065 fastq.gz 2.4 GB
EGAF50000429066 fastq.gz 2.2 GB
EGAF50000429067 fastq.gz 2.0 GB
EGAF50000429068 fastq.gz 2.0 GB
EGAF50000429069 fastq.gz 2.1 GB
EGAF50000429070 fastq.gz 924.7 MB
EGAF50000429071 fastq.gz 981.5 MB
EGAF50000429072 fastq.gz 1.7 GB
EGAF50000429073 fastq.gz 2.2 GB
EGAF50000429074 fastq.gz 868.8 MB
EGAF50000429075 fastq.gz 927.0 MB
EGAF50000429076 fastq.gz 2.1 GB
EGAF50000429077 fastq.gz 1.9 GB
EGAF50000429078 fastq.gz 1.8 GB
EGAF50000429079 fastq.gz 1.1 GB
EGAF50000429080 fastq.gz 1.9 GB
EGAF50000429081 fastq.gz 2.2 GB
EGAF50000429082 fastq.gz 2.0 GB
EGAF50000429083 fastq.gz 2.8 GB
EGAF50000429084 fastq.gz 2.0 GB
EGAF50000429085 fastq.gz 1.9 GB
EGAF50000429086 fastq.gz 2.2 GB
EGAF50000429087 fastq.gz 2.3 GB
EGAF50000429088 fastq.gz 2.0 GB
EGAF50000429089 fastq.gz 1.1 GB
EGAF50000429090 fastq.gz 1.0 GB
EGAF50000429091 fastq.gz 1.1 GB
EGAF50000429092 fastq.gz 1.4 GB
EGAF50000429093 fastq.gz 974.4 MB
EGAF50000429094 fastq.gz 2.4 GB
EGAF50000429095 fastq.gz 3.1 GB
EGAF50000429096 fastq.gz 2.2 GB
EGAF50000429097 fastq.gz 2.1 GB
EGAF50000429098 fastq.gz 909.7 MB
EGAF50000429099 fastq.gz 2.1 GB
EGAF50000429100 fastq.gz 2.3 GB
EGAF50000429101 fastq.gz 1.1 GB
EGAF50000429102 fastq.gz 1.5 GB
EGAF50000429103 fastq.gz 2.1 GB
EGAF50000429104 fastq.gz 2.2 GB
EGAF50000429105 fastq.gz 2.0 GB
EGAF50000429106 fastq.gz 1.7 GB
EGAF50000429107 fastq.gz 2.0 GB
EGAF50000429108 fastq.gz 2.4 GB
EGAF50000429109 fastq.gz 1.7 GB
EGAF50000429110 fastq.gz 2.1 GB
EGAF50000429111 fastq.gz 2.2 GB
EGAF50000429112 fastq.gz 2.1 GB
EGAF50000429113 fastq.gz 1.9 GB
EGAF50000429114 fastq.gz 2.4 GB
EGAF50000429115 fastq.gz 2.1 GB
EGAF50000429116 fastq.gz 2.2 GB
EGAF50000429117 fastq.gz 1.5 GB
EGAF50000429118 fastq.gz 2.1 GB
EGAF50000429119 fastq.gz 1.5 GB
EGAF50000429120 fastq.gz 1.6 GB
EGAF50000429121 fastq.gz 1.6 GB
EGAF50000429122 fastq.gz 2.1 GB
EGAF50000429123 fastq.gz 1.4 GB
EGAF50000429124 fastq.gz 1.5 GB
EGAF50000429125 fastq.gz 2.4 GB
EGAF50000429126 fastq.gz 2.1 GB
EGAF50000429127 fastq.gz 1.8 GB
EGAF50000429128 fastq.gz 2.3 GB
EGAF50000429129 fastq.gz 1.6 GB
EGAF50000429130 fastq.gz 2.0 GB
EGAF50000429131 fastq.gz 1.2 GB
EGAF50000429132 fastq.gz 2.5 GB
EGAF50000429133 fastq.gz 1.6 GB
EGAF50000429134 fastq.gz 1.1 GB
EGAF50000429135 fastq.gz 1.4 GB
EGAF50000429136 fastq.gz 1.8 GB
EGAF50000429137 fastq.gz 2.2 GB
EGAF50000429138 fastq.gz 2.6 GB
EGAF50000429139 fastq.gz 3.0 GB
166 Files (300.9 GB)