About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS data of paediatric TCF3::PBX1 acute lymphoblastic leukemia (set2)

The dataset includes FASTQ and BAM files from diagnostic and matched remission (control) samples of one TCF3::PBX1 ALL patient (ALLT-376). Sequencing library was made using PCR free-based WGS library preparation (PCR-), using NEB Next® Ultra™ DNA Library Prep Kit. Both diagnostic (90x) and remission (30x) samples were sequenced using HiSeq X.

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Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital

Data will be shared if the proposed project falls within the patient/caretaker consent

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001257 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000429518 fq.gz 21.6 GB
EGAF50000429519 fq.gz 22.5 GB
EGAF50000429520 fq.gz 21.6 GB
EGAF50000429521 fq.gz 22.8 GB
EGAF50000429522 bai 9.3 MB
EGAF50000429523 bam 40.7 GB
EGAF50000429524 fq.gz 1.9 GB
EGAF50000429525 fq.gz 2.0 GB
EGAF50000429526 fq.gz 19.5 GB
EGAF50000429527 fq.gz 20.2 GB
EGAF50000429544 bam 79.9 GB
EGAF50000429545 bai 9.4 MB
12 Files (252.7 GB)