WGS data of pediatric TCF3::PBX1 acute lymphoblastic leukemia (set1)
The dataset includes FASTQ and BAM files from diagnostic and matched remission (control) samples of one TCF3::PBX1 ALL patient (ALLT-335). Sequencing library was made using standard PCR-based WGS library preparation (PCR+), using NEB Next® Ultra™ DNA Library Prep Kit. Both diagnostic (90x) and remission (30x) samples were sequenced using HiSeq X.
- 15/09/2025
- 2 samples
- DAC: EGAC00001001551
- Technology: Illumina HiSeq X
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001257 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000429514 | bam | 109.0 GB |
|
|
| EGAF50000429515 | bai | 9.4 MB |
|
|
| EGAF50000429516 | bam | 54.1 GB |
|
|
| EGAF50000429517 | bai | 9.3 MB |
|
|
| EGAF50000429528 | fq.gz | 41.9 GB |
|
|
| EGAF50000429529 | fq.gz | 563.2 MB |
|
|
| EGAF50000429530 | fq.gz | 661.7 MB |
|
|
| EGAF50000429531 | fq.gz | 47.3 GB |
|
|
| EGAF50000429532 | fq.gz | 6.8 GB |
|
|
| EGAF50000429533 | fq.gz | 5.7 GB |
|
|
| EGAF50000429534 | fq.gz | 6.8 GB |
|
|
| EGAF50000429535 | fq.gz | 5.7 GB |
|
|
| EGAF50000429536 | fq.gz | 8.0 GB |
|
|
| EGAF50000429537 | fq.gz | 6.4 GB |
|
|
| EGAF50000429538 | fq.gz | 7.6 GB |
|
|
| EGAF50000429539 | fq.gz | 6.7 GB |
|
|
| EGAF50000429540 | fq.gz | 8.4 GB |
|
|
| EGAF50000429541 | fq.gz | 7.1 GB |
|
|
| EGAF50000429542 | fq.gz | 6.5 GB |
|
|
| EGAF50000429543 | fq.gz | 7.7 GB |
|
|
| 20 Files (336.9 GB) | ||||